to appear |
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648 | Benoit Frénay and Michel Verleysen. Parameter-insensitive kernel in extreme learning for non-linear support vector regression. Neurocomputing, to appear. |
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647 | Francesco Corona, Amaury Lendasse, and Elia Liitiäinen. A boundary corrected expansion of the moments of nearest neighbor distributions. Random Structures and Algorithms, to appear. |
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646 | Elena Czeizler, Eugen Czeizler, Bogdan Iancu, and Ion Petre. Quantitative refinement of reaction models. International Journal of Unconventional Computing, to appear. In Press. |
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645 | Zhanxing Zhu, Timo Similä, and Francesco Corona. Supervised distance preserving projections. Neural Processing Letters, to appear. To appear. |
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644 | Harri Haanpää, André Schumacher, and Pekka Orponen. Distributed algorithms for lifetime maximization in sensor networks via min-max spanning subgraphs. Wireless Networks, to appear. |
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643 | S. Tuomela, V. Salo S. K. Tripathi, Z. Chen, K. Laurila, T. Äijö, B. Gupta, L. Oikari, B. Stockinger, H. Lähdesmäki, and R. Lahesmaa. Identification of early gene expression changes during human th17 cell differentiation. Blood, to appear. |
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642 | S. Lehmusvaara, T. Erkkilä, A. Urbanucci, S. Jalava, J. Seppälä, A. Kaipia, P. Kujala, H. Lähdesmäki, T. L. J. Tammela, and T. Visakorpi. Goserelin and bicalutamide treatments alter the expression of micrornas in prostate. The Prostate, to appear. |
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641 | S. E. Jalava, A. Urbanucci, L. M. Latonen, K. K. Waltering, B. Sahu, O. A Jänne, J. Seppälä, H. Lähdesmäki, T. L. J. Tammela, and T. Visakorpi. Androgen-regulated mir-32 targets btg2 and is overexpressed in castration-resistant prostate cancer. Oncogene, to appear. |
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640 | Benoît Frénay, Mark van Heeswijk, Yoan Miche, Michel Verleysen, and Amaury Lendasse. Feature selection for nonlinear models using extreme learning machines. Neurocomputing, to appear. accepted for presentation at International Symposium on Extreme Learning Machines. |
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639 | Hannes Heikinheimo, Mikael Fortelius, Jussi Eronen, and Heikki Mannila. Clusterings should not be compared by visual inspection: response to Gagné & Proulx. Journal of Biogeography, to appear. |
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638 | Mikko A. Uusitalo, Jaakko Peltonen, and Tapani Ryhänen. Machine learning: How it can help nanocomputing. Journal of Computational and Theoretical Nanoscience, to appear. |
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637 | K. Cho, T. Raiko, and A. Ilin. Enhanced gradient for training restricted Boltzmann machines. Neural Computation, to appear. To appear. |
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636 | Reza Azarderakhsh, Kimmo Järvinen, and Vassil Dimitrov. Fast inversion in  with normal basis using hybrid-double multipliers. IEEE Transactions on Computers, to appear. |
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635 | Mari-Sanna Paukkeri, Alberto Pérez García-Plaza, Víctor Fresno, Raquel Martínez Unanue, and Timo Honkela. Learning a taxonomy from a set of text documents. Applied Soft Computing, to appear. |
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634 | Janne Pylkkönen and Mikko Kurimo. Analysis of extended Baum-Welch and constrained optimization for discriminative training of HMMs. IEEE Transactions on Audio, Speech and Language Processing, to appear. Accepted for publication. |
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633 | Hannu Pulakka, Ulpu Remes, Santeri Yrttiaho, Kalle Palomäki, Mikko Kurimo, and Paavo Alku. Bandwidth extension of telephone speech to low frequencies using sinusoidal synthesis and a Gaussian mixture model. IEEE Transactions on Audio, Speech and Language Processing, to appear. Accepted for publication. |
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632 | Mikael Kuusela, Tommi Vatanen, Eric Malmi, Tapani Raiko, Timo Aaltonen, and Yoshikazu Nagai. Semi-supervised anomaly detection - towards model-independent searches of new physics. Journal of Physics: Conference Series, to appear. |
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631 | John Dines, Hui Liang, Lakshmi Saheer, Matthew Gibson, William Byrne, Keiichiro Oura, Keiichi Tokuda, Junichi Yamagishi, Simon King, Mirjam Wester, Teemu Hirsimäki, Reima Karhila, and Mikko Kurimo. Personalising speech-to-speech translation: unsupervised cross-lingual speaker adaptation for hmm-based speech synthesis. Computer, Speech & Language, to appear. Accepted for publication. |
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630 | M. Almeida, J. Bioucas-Dias, R. Vigário, and E. Oja. A comparison of algorithms for separation of synchronous subspaces. Bulletin of the Polish Academy of Sciences, to appear. |
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629 | Mari-Sanna Paukkeri, Marja Ollikainen, and Timo Honkela. Assessing user-specific difficulty of documents. Information Processing & Management, to appear. |
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628 | Yoan Miche, Meng-Hiot Lim, Rizky Medzseva, and Amaury Lendasse. Meme representations for game agents. World Wide Web - Internet and Web Information System, NA(NA):NA, to appear. Special Issue of ELM2012 Conference, accepted for publication. |
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627 | Yoan Miche, Anton Akusok, József Hegedüs, Rui Nian, and Amaury Lendasse. A two-stage methodology using k-NN and false positive minimizing ELM for nominal data classification. Cognitive Computation, NA(NA):NA, to appear. Special Issue of ELM2012 Conference, accepted for publication. |
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in print |
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626 | Nima Reyhani, Jarkko Ylipaavalniemi, Ricardo Vigario, and Erkki Oja. Consistency and asymptotic normality of fastica and bootstrap fastica. Signal Processing, In print. |
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2013 |
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625 | Francesco Corona, Michela Mulas, Herni Haimi, Laura Sundell, Mari Heinonen, and Riku Vahala. Monitoring nitrate concentrations in the denitrifying post-filtration unit of a municipal wastewater treatment plant. Journal of Process Control, 23(2):158–170, 2013. |
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624 | Andrea Röck and Kaisa Nyberg. Generalization of Matsui's Algorithm 1 to linear hull for key-alternating block ciphers. Designs, Codes and Cryptography, 66(1-3):175–193, 2013. |
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623 | Sami Keronen, Heikki Kallasjoki, Ulpu Remes, Guy J. Brown, Jort F. Gemmeke, and Kalle J. Palomäki. Mask estimation and imputation methods for missing data speech recognition in a multisource reverberant environment. Computer Speech and Language, 27(3):798–819, 2013. |
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2012 |
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622 | Tarja Niini, Ilari Scheinin, Leo Lahti, Suvi Savola, Fredrik Mertens, Jaakko Hollmén, Tom Böhling, Aarne Kivioja, Karolin H. Nord, and Sakari Knuutila. Homozygous deletions of cadherin genes in chondrosarcoma — an array CGH study. Cancer Genetics, 205(11):588–593, November 2012. |
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621 | Janne Pylkkönen and Mikko Kurimo. Analysis of extended baum-welch and constrained optimization for discriminative training of hmms. IEEE Transcations on Audio, Speech, and Language Processing, 20(9):2409–2419, November 2012. |
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620 | Hannu Pulakka, Ulpu Remes, Santeri Yrttiaho, Kalle Palomäki, Mikko Kurimo, and Paavo Alku. Bandwidth extension of telephone speech to low frequencies using sinusoidal synthesis and a Gaussian mixture model. IEEE Trans. Audio, Speech, and Language Processing, 20(8):2219–2231, October 2012. |
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619 | Miki Sirola and Jaakko Talonen. Self-organizing map based visualization techniques and their assessment. International Journal of Computing, 11(Vol.11,Issue 2):96–103, September 2012. |
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618 | Karin Junker, Dusan Sovilj, Ingrid Krönke, and Joachim Dippner. Climate induced changes in benthic macrofauna – A non-linear model approach. Journal of Marine Systems, 96-97(0):90–94, August 2012. |
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617 | Nima Reyhani, Jarkko Ylipaavalniemi, Ricardo Vigário, and Erkki Oja. Consistency and asymptotic normality of FastICA and bootstrap FastICA. Signal Processing, 92(8):1767–1778, August 2012. |
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616 | Miki Sirola and Jaakko Talonen. Combining neural methods and knowledge-based methods in accident management. Advances in Artificial Neural Systems, 2012(534683):6, July 2012. |
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615 | Sami Virpioja, Mari-Sanna Paukkeri, Abhishek Tripathi, Tiina Lindh-Knuutila, and Krista Lagus. Evaluating vector space models with canonical correlation analysis. Natural Language Engineering, 18(03):399–436, July 2012. |
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614 | Kaj Sotala and Harri Valpola. Coalescing minds: brain uploading-related group mind scenarios. International Journal of Machine Consciousness, 04(01):293–312, June 2012. |
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613 | Jithra Adikari, Vassil Dimitrov, and Kimmo Järvinen. A fast hardware architecture for integer to  NAF conversion for Koblitz curves. IEEE Transactions on Computers, 61(5):732–737, May 2012. |
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612 | Philipp Grabher, Johann Grossschädl, Simon Hoerder, Kimmo Järvinen, Dan Page, Stefan Tillich, and Marcin Wójcik. An exploration of mechanisms for dynamic cryptographic instruction set extension. Journal of Cryptographic Engineering, 2(1):1–18, May 2012. |
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611 | Miguel A. Prada, Janne Toivola, Jyrki Kullaa, and Jaakko Hollmén. Three-way analysis of structural health monitoring data. Neurocomputing, 80(0):119–128, March 2012. |
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610 | Miguel A. Prada, Janne Toivola, Jyrki Kullaa, and Jaakko Hollmén. Three-way analysis of structural health monitoring data. Neurocomputing, 80(0):119–128, March 2012. |
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609 | Janne Hakkarainen, Alexander Ilin, Antti Solonen, Marko Laine, Heikki Haario, Johanna Tamminen, Erkki Oja, and Heikki Järvinen. On closure parameter estimation in chaotic systems. Nonlinear Processes in Geophysics, 19(-):127–143, 2012. |
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608 | Hannes Heikinheimo, Jussi T. Eronen, Alexander Sennikov, Christopher D. Preston, Emilia Oikarinen, Pertti Uotila, Heikki Mannila, and Mikael Fortelius. Convergence in the distribution patterns of europe’s plants and mammals is due to environmental forcing. Journal of Biogeography, 39(9):1633–1644, 2012. |
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607 | Elena Czeizler, Eugen Czeizler, Bogdan Iancu, and Ion Petre. Quantitative model refinement as a solution to the combinatorial size explosion of biomodels. Electronic Notes in Theoretical Computer Science, 284(0):35–53, 2012. |
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606 | Eugen Czeizler, Andrzej Mizera, Elena Czeizler, Ralph-Johan Back, John E. Eriksson, and Ion Petre. Quantitative analysis of the self-assembly strategies of intermediate filaments from tetrameric vimentin. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 9(3):885–898, 2012. |
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605 | Eugen Czeizler, Vladimir Rogojin, and Ion Petre. The phosphorylation of the heat shock factor as a modulator for the heat shock response. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 9(5):885–898, 2012. |
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604 | Andrzej Mizera, Eugen Czeizler, and Ion Petre. Self-assembly models of variable resolution. LNBI Transactions on Computational Systems Biology, XIV(7625):181–203, 2012. |
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603 | Michela Mulas, Francesco Corona, Herni Haimi, Laura Sundell, Mari Heinonen, and Riku Vahala. Nitrate estimation in the denitrifying post-filtration unit of a municipal wastewater treatment plant: the viikinmäki case. Water Science & Technology, 65(8):1521–1529, 2012. |
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602 | Francesco Corona, Michela Mulas, Roberto Baratti, and Jose Romagnoli. Data-derived analysis and inference for an industrial deethanizer. Industrial & Engineering Chemistry Research, 51(42):13732–13742, 2012. |
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601 | Panu Erästö, Fabian Hoti, and Kari Auranen. Modeling transmission of multitype infectious agents - application to carriage of ıt Streptococcus pneumoniae. Statistics in Medicine, doi: 10.1002/sim.4487, 2012. |
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600 | Mehmet Gönen. Predicting drug–target interactions from chemical and genomic kernels using Bayesian matrix factorization. Bioinformatics, 28(18):2304–2310, 2012. |
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599 | Gülefsan Bozkurt Gönen, Mehmet Gönen, and Fikret Gürgen. Probabilistic and discriminative group-wise feature selection methods for credit risk analysis. Expert Systems with Applications, 39(14):11709–11717, 2012. |
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598 | S. Lehmusvaara, T. Erkkilä, A. Urbanucci, K. Waltering, J. Seppälä, V. Tuominen, J. Isola, P. Kujala, H. Lähdesmäki, A. Kaipia, T. L. J. Tammela, and T. Visakorpi. Chemical castration and antiandrogens induce differential gene expression in prostate cancer. The Journal of Pathology, 227(3):336–345, 2012. |
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597 | Jori Dubrovin, Tommi Junttila, and Keijo Heljanko. Exploiting step semantics for efficient bounded model checking of asynchronous systems. Science of Computer Programming, 77(10–11):1095–1121, 2012. |
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596 | Alexios Kotsifakos, Panagiotis Papapetrou, Jaakko Hollmén, Dimitrios Gunopulos, Vassilis Athitsos, and George Kollios. Hum-a-song: A subsequence matching with gaps-range-tolerances query-by-humming system. Proceedings of the Very Large Databases Endowement (PVLDB), 4(12):1930–1933, 2012. |
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595 | Jussi T. Eronen, M. Fortelius, F.T. Portmann, K. Puolamäki, and Christine M. Janis. Neogene aridification of the Northern Hemisphere. Geology, 40(9):823–826, 2012. |
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594 | Liping Liu, Kai Puolamäki, Jussi T. Eronen, Majid M. Ataabadi, Elina Hernesniemi, and Mikael Fortelius. Dental functional traits of mammals resolve productivity in terrestrial ecosystems past and present. Proceedings of the Royal Society B, 279(1739):2793–2799, 2012. |
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593 | Jussi Lahtinen, Janne Valkonen, Kim Björkman, Juho Frits, Ilkka Niemelä, and Keijo Heljanko. Model checking of safety-critical software in the nuclear engineering domain. Reliability Engineering & System Safety (RESS), 105(0):104–113, 2012. |
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592 | Xiang Gan, Jori Dubrovin, and Keijo Heljanko. A symbolic model checking approach to verifying satellite onboard software. Electronic Communications of the EASST - Proceedings of the 11th International Workshop on Automated Verification of Critical Systems (AVOCS 2011), 46(0):1–15, 2012. |
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591 | Keijo Heljanko, Misa Keinänen, Martin Lange, and Ilkka Niemelä. Solving parity games by a reduction to SAT. Journal of Computer and System Sciences, 78(2):430–440, 2012. |
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590 | Miia Hermelin and Kaisa Nyberg. Multidimensional linear distinguishing attacks and Boolean functions. Cryptography and Communications, 4(1):47–64, 2012. |
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589 | M.R. Sabuncu and K. Van Leemput. The relevance voxel machine (rvoxm): A self-tuning bayesian model for informative image-based prediction. IEEE Transactions on Medical Imaging, 31(12):2290–2306, 2012. |
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588 | Matti Niemenmaa, Aleksi Kallio, André Schumacher, Petri Klemelä, Eija Korpelainen, and Keijo Heljanko. Hadoop-BAM: Directly manipulating next generation sequencing data in the cloud. Bioinformatics, 28(6):876–877, 2012. |
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587 | W. Delezuch, P. Marttinen, H. Kokki, M. Heikkinen, K. Vanamo, K. Pulkki, and I. Matinlauri. Serum and csf soluble cd26 and cd30 concentrations in healthy pediatric surgical outpatients. Tissue Antigens, 80(4):368–375, 2012. |
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586 | T. Peltola, P. Marttinen, and A. Vehtari. Finite adaptation and multistep moves in the metropolis-hastings algorithm for variable selection in genome-wide association analysis. PLoS ONE, 7(11):e49445, 2012. |
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585 | S. Castillo-Ramirez, J. Corander, P. Marttinen, M. Aldeljawi, W.P. Hanage, H. Westh, K. Boye, Z. Gulay, S.D. Bentley, J. Parkhill, M.T. Holden, and E.J. Feil. Phylogeographic variation in recombination rates within a global clone of methicillin-resistant staphylococcus aureus (mrsa). Genome Biology, 13(12):R126, 2012. |
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584 | Petteri Kaski, Mahdad Khatirinejad, and Patric R. J. Östergård. Steiner triple systems satisfying the 4-vertex condition. Designs, Codes and Cryptography, 62(3):323–330, 2012. |
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583 | Andreas Björklund, Thore Husfeldt, Petteri Kaski, and Mikko Koivisto. The travelling salesman problem in bounded degree graphs. ACM Transactions on Algorithms, 8(2):Article No. 18, 2012. |
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582 | Qi Yu, Yoan Miche, Emil Eirola, Mark van Heeswijk, Eric Séverin, and Amaury Lendasse. Regularized extreme learning machine for regression with missing data. accepted to Neurocomputing, 2012. |
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581 | Risto M. Hakala. An upper bound for the linearity of Exponential Welch Costas functions. Finite Fields and Their Applications, 18(4):855–862, 2012. |
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580 | M. Heinonen, H. Shen, N. Zamboni, and J. Rousu. Metabolite identification and molecular fingerprint prediction through machine learning. Bioinformatics, 28(18):2333–2341, 2012. |
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579 | Zhirong Yang and Erkki Oja. Quadratic nonnegative matrix factorization. Pattern Recognition, 45(4):1500–1510, 2012. |
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578 | José Caldas, Nils Gehlenborg, Eeva Kettunen, Ali Faisal, Mikko Rönty, Andrew G. Nicholson, Sakari Knuutila, Alvis Brazma, and Samuel Kaski. Data-driven information retrieval in heterogeneous collections of transcriptomics data links SIM2s to malignant pleural mesothelioma. Bioinformatics, 28(2):246–253, 2012. Supplementary data and source code are available from http://www.ebi.ac.uk/fg/research/rex. |
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577 | Jukka Corander, Tero Aittokallio, Samuli Ripatti, and Samuel Kaski. The rocky road to personalized medicine: computational and statistical challenges. Personalized Medicine, 9(2):109–114, 2012. |
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576 | Elisabeth Georgii, Jarkko Salojärvi, Mikael Brosché, Jaakko Kangasjärvi, and Samuel Kaski. Targeted retrieval of gene expression measurements using regulatory models. Bioinformatics, 28(18):2349–2356, 2012. |
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575 | Suleiman A. Khan, Ali Faisal, John Patrick Mpindi, Juuso A. Parkkinen, Tuomo Kalliokoski, Antti Poso, Olli P. Kallioniemi, Krister Wennerberg, and Samuel Kaski. Comprehensive data-driven analysis of the impact of chemoinformatic structure on the genome-wide biological response profiles of cancer cells to 1159 drugs. BMC Bioinformatics, 13(112), 2012. |
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574 | Miika Koskinen, Jaakko Viinikanoja, Mikko Kurimo, Arto Klami, Samuel Kaski, and Riitta Hari. Identifying fragments of natural speech from the listener's MEG signals. Human Brain Mapping, -(-):–, 2012. |
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573 | Gayle Leen, Jaakko Peltonen, and Samuel Kaski. Focused multi-task learning in a Gaussian process framework. Machine Learning, 89(1-2):157–182, 2012. |
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572 | Nathan Bryan, Ehsan Chiniforooshan, David Doty, Lila Kari, and Shinnosuke Seki. The power of nondeterminism in self-assembly. Theory of Computing, 2012. |
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571 | Ehsan Chiniforooshan, Mark Daley, Oscar H. Ibarra, Lila Kari, and Shinnosuke Seki. One-reversal counter machines and multihead automata: Revisited. Theoretical Computer Science, 454:81–87, 2012. |
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570 | S. Z. Fazekas, H. Ito, Y. Okuno, S. Seki, and K. Taneishi. On computational complexity of graph inference from counting. Natural Computing, 2012. DOI:10.1007/s11047-012-9349-2. |
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569 | O. H. Ibarra and S. Seki. Characterizations of bounded semilinear languages by one-way and two-way deterministic machines. International Journal of Foundations of Computer Science, 2012. |
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568 | S. Seki. Absoluteness of subword inequality is undecidable. Theoretical Computer Science, 418:116–120, 2012. |
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567 | Mari-Sanna Paukkeri, Alberto Pérez García-Plaza, Víctor Fresno, Raquel Martínez Unanue, and Timo Honkela. Learning a taxonomy from a set of text documents. Applied Soft Computing, 12(3):1138–1148, 2012. |
|
2011 |
|
566 | Tuomas Launiainen, Keijo Heljanko, and Tommi Junttila. Efficient model checking of PSL safety properties. IET Computers & Digital Techniques, 5(6):479–492, November 2011. |
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|
565 | Denis S. Krotov, Patric R. J. Östergård, and Olli Pottonen. On optimal binary one-error-correcting codes of lengths  and  . IEEE Transactions on Information Theory, 57(10):6771–6779, oct. 2011. |
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564 | Ulpu Remes, Kalle J. Palomäki, Tapani Raiko, Antti Honkela, and Mikko Kurimo. Missing-feature reconstruction with a bounded nonlinear state-space model. IEEE Signal Processing Letters, 18:563–566, October 2011. |
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563 | Ville T. Turunen and Mikko Kurimo. Speech retrieval from unsegmented Finnish audio using statistical morpheme-like units for segmentation, recognition, and retrieval. ACM Trans. Speech Lang. Process., 8(1):1:1–1:25, October 2011. |
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562 | Mark van Heeswijk, Yoan Miche, Erkki Oja, and Amaury Lendasse. GPU-accelerated and parallelized ELM ensembles for large-scale regression. Neurocomputing, 74(16):2430–2437, September 2011. |
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561 | Yoan Miche, Mark van Heeswijk, Patrick Bas, Olli Simula, and Amaury Lendasse. TROP-ELM: a double-regularized ELM using LARS and tikhonov regularization. Neurocomputing, 74(16):2413–2421, September 2011. |
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560 | Mika Sulkava, Sebastiaan Luyssaert, Sönke Zaehle, and Dario Papale. Assessing and improving the representativeness of monitoring networks: The European flux tower network example. Journal of Geophysical Research – Biogeosciences, 116:G00J04, May 2011. |
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559 | Mikko Korpela, Pekka Nöjd, Jaakko Hollmén, Harri Mäkinen, Mika Sulkava, and Pertti Hari. Photosynthesis, temperature and radial growth of Scots pine in northern Finland: identifying the influential time intervals. Trees – Structure and Function, 25(2):323–332, April 2011. |
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558 | Jort F. Gemmeke, Bert Cranen, and Ulpu Remes. Sparse imputation for large vocabulary noise robust ASR. Computer Speech and Language, 25:462–479, April 2011. |
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557 | Vassil S. Dimitrov, Kimmo U. Järvinen, and Jithra Adikari. Area-efficient multipliers based on multiple-radix representations. IEEE Transactions on Computers, 60(2):189–201, February 2011. |
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556 | Antti E. J. Hyvärinen, Tommi Junttila, and Ilkka Niemelä. Partitioning search spaces of a randomized search. Fundamenta Informaticae, 107(2–3):289–311, 2011. |
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555 | Emilia Oikarinen and Stefan Woltran. Characterizing strong equivalence for argumentation frameworks. Artificial Intelligence, 175(14–15):1985–2009, 2011. |
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554 | E. Urgard, T. Vooder, U. V osa, K. Välk, M. Liu, C. Luo, Fabian Hoti, R. Roosipuu, T. Annilo, J. Laine, C.M. Frenz, L. Zhang, and A. Metspalu. Metagenes associated with survival in non-small cell lung cancer. Cancer Informatics, 10:1–9, 2011. |
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553 | Alexios Kotsifakos, Panagiotis Papapetrou, Jaakko Hollmén, and Dimitrios Gunopulos. A subsequence matching with gaps-range-tolerances framework: A query-by-humming application. Proceedings of the VLDB Endowment, 4(11):761–771, 2011. |
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552 | Joni Pajarinen, Jaakko Peltonen, and Mikko A. Uusitalo. Fault tolerant machine learning for nanoscale cognitive radio. Neurocomputing, 74(5):753 – 764, 2011. |
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551 | Jussi T. Eronen, Kai Puolamäki, Hannes Heikinheimo, Heikki Lokki, Ari Venäläinen, Heikki Mannila, and Mikael Fortelius. The effect of scale, climate and environment on species richness and spatial distribution of Finnish birds. Annales Zoologici Fennici, 48(5):257–274, 2011. |
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550 | Aleksi Kallio, Kai Puolamäki, Mikael Fortelius, and Heikki Mannila. Correlations and co-occurrences of taxa: the role of temporal, geographic and taxonomic restrictions. Palaeontologia Electronica, 14(1):4A, 2011. |
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549 | Kimmo Järvinen. Optimized FPGA-based elliptic curve cryptography processor for high-speed applications. Integration, the VLSI Journal, 44(4):270–279, 2011. |
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548 | B.J. Hanseeuw, K. Van Leemput, M. Kavec, C. Grandin, X. Seron, and A. Ivanoiu. Mild cognitive impairment: differential atrophy in the hippocampal subfields. American Journal of NeuroRadiology, 32(9):1658–1661, 2011. |
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547 | Joris Kinable and Orestis Kostakis. Malware Classification based on Call Graph Clustering. Journal in Computer Virology, 7(4):233–245, 2011. |
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546 | Kalle J. Palomäki and Guy J. Brown. A computational model of binaural speech recognition: role of across-frequency vs. within-frequency processing and internal noise. Speech Communication, 53(6):924–940, 2011. |
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545 | Hong-Li Zeng, Erik Aurell, Mikko Alava, and Hamed Mahmoudi. Network inference using asynchronously updated kinetic ising model. Physical Review E, 83(4):041135, 2011. |
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544 | Erik Aurell and Hamed Mahmoudi. A message-passing scheme for non-equilibrium stationary states. Journal of Statistical Mechanics: Theory and Experiment, 2011:P04014, 2011. |
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543 | Erik Aurell and Hamed Mahmoudi. Three lemmas on the dynamic cavity method. Arxiv preprint arXiv:1104.0649, 2011. |
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542 | Terttu Nevalainen, Helena Raumolin-Brunberg, and Heikki Mannila. The diffusion of language change in real time: Progressive and conservative individuals and the time depth of change. Language Variation and Change, 23(1):1–43, 2011. |
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541 | Aleksi Kallio, Niko Vuokko, Markus Ojala, Niina Haiminen, and Heikki Mannila. Randomization techniques for assessing the significance of gene periodicity results. BMC Bioinformatics, 12:330, 2011. |
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540 | Gemma C. Garriga, Esa Junttila, and Heikki Mannila. Banded structure in binary matrices. Knowl. Inf. Syst., 28(1):197–226, 2011. |
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539 | Miia Hermelin and Kaisa Nyberg. Multidimensional linear distinguishing attacks and boolean functions.. Cryptography and Communications, 2011. |
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538 | Mikael Kuusela, Eric Malmi, Risto Orava, and Tommi Vatanen. Soft classification of diffractive interactions at the LHC. AIP Conference Proceedings, 1350(1):111–114, 2011. |
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537 | Aleksi Kallio, Niko Vuokko, Markus Ojala, Niina Haiminen, and Heikki Mannila. Randomization techniques for assessing the significance of gene periodicity results. BMC Bioinformatics, 12(1):330, 2011. |
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536 | Charles J. Colbourn, Petteri Kaski, Patric R. J. Östergård, David A. Pike, and Olli Pottonen. Nearly Kirkman triple systems of order 19 and Hanani triple systems of order 19. Discrete Mathematics, 311(10–11):827–834, 2011. |
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535 | Petteri Kaski, Veli Mäkinen, and Patric R. J. Östergård. The cycle switching graph of the Steiner triple systems of order 19 is connected. Graphs and Combinatorics, 27:539–546, 2011. |
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534 | Alexander Hulpke, Petteri Kaski, and Patric R. J. Östergård. The number of Latin squares of order 11. Mathematics of Computation, 80:1197–1219, 2011. |
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533 | Andreas Björklund, Thore Husfeldt, Petteri Kaski, and Mikko Koivisto. Covering and packing in linear space. Information Processing Letters, 111(21–22):1033–1036, 2011. |
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532 | Patrik Floréen, Marja Hassinen, Joel Kaasinen, Petteri Kaski, Topi Musto, and Jukka Suomela. Local approximability of max-min and min-max linear programs. Theory of Computing Systems, 49(4):672–697, 2011. |
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531 | Zhirong Yang and Erkki Oja. Projective nonnegative matrix factorization based on alpha-divergence. Journal of Artificial Intelligence and Soft Computing Research, 1(1):7–16, 2011. |
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530 | Zhirong Yang and Erkki Oja. Unified development of multiplicative algorithms for linear and quadratic nonnegative matrix factorization. IEEE Transactions on Neural Networks, 22(12):1878–1891, 2011. |
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529 | M. Almeida, J.-H. Schleimer, J. Bioucas-Dias, and R. Vigário. Source Separation of Phase-Locked Signals. IEEE transactions on Neural Networks, 22:1419–1434, 2011. |
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528 | Antti Ajanki, Mark Billinghurst, Hannes Gamper, Toni Järvenpää, Melih Kandemir, Samuel Kaski, Markus Koskela, Mikko Kurimo, Jorma Laaksonen, Kai Puolamäki, Teemu Ruokolainen, and Timo Tossavainen. An augmented reality interface to contextual information. Virtual Reality, 15(2-3):161–173, 2011. |
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527 | José Caldas and Samuel Kaski. Hierarchical generative biclustering for microRNA expression analysis. Journal of Computational Biology, 18:251–261, 2011. |
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526 | Samuel Kaski and Jaakko Peltonen. Dimensionality reduction for data visualization. IEEE Signal Processing Magazine, 28(2):100–104, 2011. |
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525 | Leo Lahti, Laura L. Elo, Tero Aittokallio, and Samuel Kaski. Probabilistic analysis of probe reliability in differential gene expression studies with short oligonucleotide arrays. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 8:217–225, 2011. |
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524 | Marko Sysi-Aho, Andrey Ermolov, Peddinti V. Gopalacharyulu, Abhishek Tripathi, Tuulikki Seppänen-Laakso, Johanna Maukonen, Ismo Mattila, Suvi T. Ruohonen, Laura Vähätalo, Laxman Yetukuri, Taina Härkönen, Erno Lindfors, Janne Nikkilä, Jorma Ilonen, Olli Simell, Maria Saarela, Mikael Knip, Samuel Kaski, Eriika Savontaus, and Matej Orešic. Metabolic regulation in progression to autoimmune diabetes. PLoS Computational Biology, 7:e1002257, 2011. |
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523 | Abhishek Tripathi, Arto Klami, Matej Orešic, and Samuel Kaski. Matching samples of multiple views. Data Mining and Knowledge Discovery, 23:300–321, 2011. |
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522 | Laxman Yetukuri, Ilkka Huopaniemi, Artturi Koivuniemi, Marianna Maranghi, Anne Hiukka, Heli Nygren, Samuel Kaski, Marja-Riitta Taskinen, Ilpo Vattulainen, Matti Jauhiainen, and Matej Orešic. High density lipoprotein structural changes and drug response in lipidomic profiles following the long-term fenofibrate therapy in the FIELD substudy. PLoS ONE, 6(8):e23589, 2011. |
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521 | Sami Virpioja, Ville T. Turunen, Sebastian Spiegler, Oskar Kohonen, and Mikko Kurimo. Empirical comparison of evaluation methods for unsupervised learning of morphology. Traitement Automatique des Langues, 52(2):45–90, 2011. |
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520 | Timo Honkela. Kunnioitusta erilaisuutta kohtaan. Tieteessä tapahtuu, 29(4-5):38–39, 2011. |
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519 | Kimmo Järvinen. Elliptisten käyrien salausmenetelmät ja niiden laskenta ohjelmoitavalla logiikalla. Tietojenkäsittelytiede, 32:34–47, Heinäkuu 2011. |
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2010 |
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518 | Antti Honkela, Tapani Raiko, Mikael Kuusela, Matti Tornio, and Juha Karhunen. Approximate Riemannian conjugate gradient learning for fixed-form variational Bayes. Journal of Machine Learning Research, 11:3235–3268, Nov 2010. |
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517 | Anu Usvasalo, Riikka Räty, Arja Harila-Saari, Pirjo Koistinen, Eeva-Riitta Savolainen, Sakari Knuutila, Erkki Elonen, Ulla M. Saarinen-Pihkala, Sakari Knuutila, and Jaakko Hollmén. Prognostic classification of patients with acute lymphoblastic leukemia by using copy number profiles identified from array-based comparative genomic hybridization data. Leukemia Research, 34(11):1476–1482, November 2010. |
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516 | R. Kivisaari, P. Rapeli, K. Van Leemput, S. Kähkönen, V. Puuskari, O. Jokela, and T. Autti. Cerebral measurements and their correlation with the onset age and the duration of opioid abuse. Journal of Opioid Management, 6(6):423–429, November/December 2010. |
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515 | Matti Pöllä and Timo Honkela. Negative selection of written language using character multiset statistics. Journal of Computer Science and Technology, 25(6):1256–1266, November 2010. |
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514 | M.R. Sabuncu, B.T.T. Yeo, K. Van Leemput, B. Fischl, and P. Golland. A generative model for image segmentation based on label fusion. IEEE Transactions on Medical Imaging, 29(10):1714–1729, October 2010. |
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513 | T. Riklin-Raviv, K. Van Leemput, B.H. Menze, W.M. Wells, and P. Golland. Segmentation of image ensembles via latent atlases. Medical Image Analysis, 14(5):654–665, October 2010. |
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512 | Francesco Corona, Amaury Lendasse, and Elia Liitiäinen. A boundary corrected expansion of the moments of nearest neighbor distributions. Random Structures and Algorithms, 37(2):223–247, September 2010. |
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511 | T. Saukkonen, S. Heikkinen, A. Hakkarainen, A.M. Häkkinen, K. Van Leemput, M. Lipsanen-Nyman, and N. Lundbom. Association of intramyocellular, intraperitoneal and liver fat with glucose tolerance in severely obese adolescents. European Journal of Endocrinology, 163(3):413–419, September 2010. |
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510 | Federico Montesino Pouzols and Angel Barriga Barros. Automatic clustering-based identification of autoregressive fuzzy inference models for time series. Neurocomputing, 73(10):1937–1949, August 2010. |
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509 | Federico Montesino Pouzols and Amaury Lendasse. Evolving fuzzy optimally pruned extreme learning machine for regression problems. Evolving Systems, 1(1):43–58, August 2010. |
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508 | Alexander Ilin and Tapani Raiko. Practical approaches to principal component analysis in the presence of missing values. Journal of Machine Learning Research (JMLR), 11:1957–2000, July 2010. |
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507 | Junichi Yamagishi, Bela Usabaev, Simon King, Oliver Watts, John Dines, Jilei Tian, Rile Hu, Yong Guan, Keiichiro Oura, Keiichi Tokuda, Reima Karhila, and Mikko Kurimo. Thousands of voices for HMM-based speech synthesis-analysis and application of TTS systems built on various ASR corpora. IEEE Transactions on Audio, Speech and Language Processing, 18(5):984–1004, July 2010. |
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506 | Souhaib Ben Taieb, Antti Sorjamaa, and Gianluca Bontempi. Multiple-output modelling for multi-step-ahead time series forecasting. Neurocomputing, 73(10-12):1950–1957, June 2010. |
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505 | Fernando Mateo, Dusan Sovilj, and Rafael Gadea. Approximate k-NN delta test minimization method using genetic algorithms: Application to time series. Neurocomputing, 73(10-12):2017–2029, June 2010. |
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504 | Dusan Sovilj, Antti Sorjamaa, Qi Yu, Yoan Miche, and Eric Séverin. OP-ELM and OP-KNN in long-term prediction of time series using projected input data. Neurocomputing, 73(10-12):1976–1986, June 2010. |
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503 | Amaury Lendasse, Timo Honkela, and Olli Simula. European symposium on times series prediction. Neurocomputing, 73(10–12):1919–1922, June 2010. |
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502 | Alberto Guillén, Luis Herrera, Gines Rubio, Amaury Lendasse, and Hector Pomares. New method for instance or prototype selection using mutual information in time series prediction. Neurocomputing, 73(10–12):2030–2038, June 2010. |
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501 | Markus Ojala and Gemma Garriga. Permutation tests for studying classifier performance. Journal of Machine Learning Research, 11(Jun):1833–1863, June 2010. |
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500 | Mikko Korpela, Harri Mäkinen, Pekka Nöjd, Jaakko Hollmén, and Mika Sulkava. Automatic detection of onset and cessation of tree stem radius increase using dendrometer data. Neurocomputing, 73(10–12):2039–2046, June 2010. |
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499 | S. Luyssaert, P. Ciais, S. L. Piao, E.-D. Schulze, M. Jung, S. Zaehle, M. J. Schelhaas, M. Reichstein, G. Churkina, D. Papale, G. Abril, C. Beer, J. Grace, D. Loustau, G. Matteucci, F. Magnani, G. J. Nabuurs, H. Verbeeck, Mika Sulkava, G. R. van der Werf, and I. A. Janssens. The european carbon balance. Part 3: forests. Global Change Biology, 16(5):2039–2046, May 2010. |
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498 | Antti Honkela, Charles Girardot, E Hilary Gustafson, Ya-Hsin Liu, Eileen E M Furlong, Neil D Lawrence, and Magnus Rattray. Model-based method for transcription factor target identification with limited data. Proc Natl Acad Sci U S A, 107(17):7793–7798, Apr 2010. |
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497 | Anu Usvasalo, Shinsuke Ninomiya, Riikka Räty, Jaakko Hollmén, Ulla M. Saarinen-Pihkala, Erkki Elonen, and Sakari Knuutila. Focal 9p instability in hematologic neoplasias revealed by comparative genomic hybridization and single nucleotide polymorphism microarray analyses. Genes, Chromosomes, and Cancer, 49(4):309–318, April 2010. |
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496 | Laxman Yetukuri, Jarkko Tikka, Jaakko Hollmén, and Matej Orešic. Functional prediction of unidentified lipids using supervised classifiers. Metabolomics, 6(1):18–26, April 2010. |
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495 | Paul Merlin, Antti Sorjamaa, Bertrand Maillet, and Amaury Lendasse. X-SOM and l-SOM: A double classification approach for missing value imputation. Neurocomputing, 73(7-9):1103–1108, March 2010. |
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494 | Federico Montesino Pouzols, Amaury Lendasse, and Angel Barriga Barros. Autoregressive time series prediction by means of fuzzy inference systems using nonparametric residual variance estimation. Fuzzy Sets and Systems, 161(4):471–497, February 2010. |
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493 | Qi Yu, Yoan Miche, Antti Sorjamaa, Alberto Guillén, Amaury Lendasse, and Eric Séverin. Op-knn: Method and applications. Advances in Artificial Neural Systems, 2010:6 pages, February 2010. |
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492 | Heikki Järvinen, Petri Räisänen, Marko Laine, Johanna Tamminen, Alexander Ilin, Erkki Oja, Antti Solonen, and Heikki Haario. Estimation of ECHAM5 climate model closure parameters with adaptive MCMC. Atmospheric Chemistry and Physics Discussion, 10:11951–11973, 2010. |
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491 | Antti Sorjamaa, Amaury Lendasse, Yves Cornet, and Eric Deleersnijder. An improved methodology for filling missing values in spatiotemporal climate data set. Computational Geosciences, 14:55–64, January 2010. |
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490 | Antti Ukkonen. Approximate top-k retrieval from hidden relations. CoRR, abs/1008.5057, 2010. |
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489 | Erik Aurell, Charles Ollion, and Yasser Roudi. Dynamics and performance of susceptibility propagation on synthetic data. European Physics Journal B, 77:587–595, 2010. |
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488 | Francesco Corona, Michela Mulas, Roberto Baratti, and Jose Romagnoli. On the topological modeling and analysis of industrial process data using the SOM. Computers and Chemical Engineering, 34(12):2022–2032, 2010. |
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487 | Janne Valkonen and Ilkka Niemelä. Turvallisuuskriittisten järjestelmien verifiointi mallintarkastuksella. ATS Ydintekniikka, 39(1):6–8, 2010. |
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486 | Jaakko Luttinen and Alexander Ilin. Transformations in variational Bayesian factor analysis to speed up learning. Neurocomputing, 73:1093–1102, 2010. |
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485 | J. T. Eronen, K. Puolamäki, L. Liu, K. Lintulaakso, J. Damuth, C. Janis, and M. Fortelius. Precipitation and large herbivorous mammals, part I: Estimates from present-day communities. Evolutionary Ecology Research, 12(2):217–233, 2010. |
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484 | J. T. Eronen, K. Puolamäki, L. Liu, K. Lintulaakso, J. Damuth, C. Janis, and M. Fortelius. Precipitation and large herbivorous mammals, part II: Application to fossil data. Evolutionary Ecology Research, 12(2):235–248, 2010. |
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483 | Billy Bob Brumley and Kimmo U. Järvinen. Conversion algorithms and implementations for Koblitz curve cryptography. IEEE Transactions on Computers, 59(1):81–92, January 2010. |
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482 | Lauri Ahlroth, André Schumacher, and Harri Haanpää. On the power of lookahead in online lot-sizing. Operations Research Letters, 38(6):522 – 526, 2010. |
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481 | Leo Lahti, Juha E. A. Knuuttila, and Samuel Kaski. Global modeling of transcriptional responses in interaction networks. Bioinformatics, 26:2713–2720, 2010. Implementations in R and Matlab available at http://netpro.r-forge.r-project.org/. |
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480 | Neda Mosakhani, Mohamed Guled, Leo Lahti, Ioana Borze, Minna Forsman, Jorma Ryhänen, and Sakari Knuutila. Unique microRNA profile in Dupuytren's contracture supports deregulation of beta-catenin pathway. Modern Pathology, 23:1544–1522, 2010. |
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479 | Juha Saarinen, Emilia Oikarinen, Mikael Fortelius, and Heikki Mannila. The living and the fossilized: how well do unevenly distributed points capture the faunal information in a grid. Evolutionary Ecology Research, 12:363–376, 2010. |
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478 | T. Vesala, S. Launiainen, P. Kolari, J. Pumpanen, S. Sevanto, P. Hari, E. Nikinmaa, P. Kaski, Heikki Mannila, E. Ukkonen, S. Piao, and P. Ciais. Autumn temperature and carbon balance of a boreal scots pine forest in southern finland. Biogeosciences, 7:163–176, 2010. |
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477 | Niina Haiminen and Heikki Mannila. Evaluation of bic and cross validation for model selection on sequence segmentations. International Jounal of Data Mining and Bioinformatics, 4(6):675–698, 2010. |
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476 | Mikael Kuusela, Jerry W. Lämsä, Eric Malmi, Petteri Mehtälä, and Risto Orava. Multivariate techniques for identifying diffractive interactions at the LHC. International Journal of Modern Physics A, 25(8):1615–1647, 2010. |
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475 | Heikki Järvinen, Petri Räisänen, Marko Laine, Johanna Tamminen, Alexander Ilin, Erkki Oja, Antti Solonen, and Heikki Haario. Estimation of ECHAM5 climate model closure parameters with adaptive MCMC. Atmospheric Chemistry and Physics Discussion, 10:11951–11973, 2010. |
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474 | Patrik Floréen, Marja Hassinen, Joel Kaasinen, Petteri Kaski, Topi Musto, and Jukka Suomela. Local approximability of max-min and min-max linear programs. Theory of Computing Systems, 2010. |
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473 | Charles J. Colbourn, Anthony D. Forbes, Mike J. Grannell, Terry S. Griggs, Petteri Kaski, Patric R. J. Östergård, David A. Pike, and Olli Pottonen. Properties of the Steiner triple systems of order 19. Electronic Journal of Combinatorics, 17(1):#R98, 30pp, 2010. |
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472 | Timo Vesala, Samuli Launiainen, Pasi Kolari, Jukka Pumpanen, Sanna Sevanto, Pertti Hari, Eero Nikinmaa, Petteri Kaski, Heikki Mannila, Esko Ukkonen, Shilong Piao, and Philippe Ciais. Autumn warming and carbon balance of a boreal Scots pine forest in Southern Finland. Biogeosciences, 7:163–176, 2010. |
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471 | Andreas Björklund, Thore Husfeldt, Petteri Kaski, and Mikko Koivisto. Evaluation of permanents in rings and semirings. Information Processing Letters, 110:867–870, 2010. |
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470 | Patrik Floréen, Petteri Kaski, Valentin Polishchuk, and Jukka Suomela. Almost stable matchings by truncating the Gale–Shapley algorithm. Algorithmica, 58(1):102–118, 2010. |
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469 | Andreas Björklund, Thore Husfeldt, Petteri Kaski, and Mikko Koivisto. Trimmed Moebius inversion and graphs of bounded degree. Theory of Computing Systems, 47:637–654, 2010. |
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468 | Zahra Ahmadian, Javad Mohajeri, Mahmoud Salmasizadeh, Risto M. Hakala, and Kaisa Nyberg. A practical distinguisher for the Shannon cipher. Journal of Systems and Software, 83(4):543–547, 2010. |
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467 | Erkki Oja and Zhirong Yang. Orthogonal nonnegative learning for sparse feature extraction and approximate combinatorial optimization. Frontiers of Electrical and Electronic Engineering in China, 5(3):261–273, 2010. |
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466 | Zhirong Yang and Erkki Oja. Linear and nonlinear projective nonnegative matrix factorization. IEEE Transactions on Neural Networks, 21(5):734–749, 2010. |
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465 | C. M. Krause, A. Alafuzoff, M. Laine, and R. Vigário. The critical nature of between- and within-subject variation in event-related brain oscillatory EEG responses. Journal of Psychophysiology, 77:305–305, 2010. |
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464 | Ilkka Huopaniemi, Tommi Suvitaival, Janne Nikkilä, Matej Orešic, and Samuel Kaski. Multivariate multi-way analysis of multi-source data. Bioinformatics, 26:i391–i398, 2010. (ISMB 2010). |
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463 | Leo Lahti, Juha E. A. Knuuttila, and Samuel Kaski. Global modeling of transcriptional responses in interaction networks. Bioinformatics, 26:2713–2720, 2010. Implementations in R and Matlab available at http://netpro.r-forge.r-project.org/. |
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462 | Juuso Parkkinen and Samuel Kaski. Searching for functional gene modules with interaction component models. BMC Systems Biology, 4:4, 2010. |
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461 | Jaakko Peltonen, Yusuf Yaslan, and Samuel Kaski. Relevant subtask learning by constrained mixture models. Intelligent Data Analysis, 14:641–662, 2010. |
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460 | Simon Rogers, Arto Klami, Janne Sinkkonen, Mark Girolami, and Samuel Kaski. Infinite factorization of multiple non-parametric views. Machine Learning, 79(1-2):201–226, 2010. |
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459 | Jarkko Venna, Jaakko Peltonen, Kristian Nybo, Helena Aidos, and Samuel Kaski. Information retrieval perspective to nonlinear dimensionality reduction for data visualization. Journal of Machine Learning Research, 11:451–490, 2010. |
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458 | Harri Haanpää, André Schumacher, and Pekka Orponen. Distributed algorithms for lifetime maximization in sensor networks via min-max spanning subgraphs. Wireless Networks, 16:875–887, 2010. |
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457 | Timo Honkela, Aapo Hyvärinen, and Jaakko Väyrynen. WordICA - Emergence of linguistic representations for words by independent component analysis. Natural Language Engineering, 16(3):277–308, 2010. |
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456 | Timo Honkela, Tiina Lindh-Knuutila, and Krista Lagus. Measuring Adjective Spaces. Proceedings of ICANN 2010, Artificial Neural Networks, pages 351–355, 2010. |
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455 | Yoan Miche, Antti Sorjamaa, Patrick Bas, Olli Simula, Christian Jutten, and Amaury Lendasse. OP-ELM: Optimally-pruned extreme learning machine. IEEE Transactions on Neural Networks, 21(1):158–162, January 2010. |
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2009 |
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454 | Francesco Corona, Elia Liitiäinen, Amaury Lendasse, Lorenzo Sassu, Stefano Melis, and Roberto Baratti. A SOM-based approach to estimating product properties from spectroscopic measurements. Neurocomputing, 73(1–3):71–79, December 2009. |
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453 | Antti Sorjamaa, Paul Merlin, Bertrand Maillet, and Amaury Lendasse. A non-linear approach for completing missing values in temporal databases. European Journal of Economic and Social Systems, 22(1):99–117, November 2009. |
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452 | Markus Ojala, Niko Vuokko, Aleksi Kallio, Niina Haiminen, and Heikki Mannila. Randomization methods for assessing data analysis results on real-valued matrices. Statistical Analysis and Data Mining, 2(4):209–230, November 2009. |
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451 | Elia Liitiäinen, Michel Verleysen, Francesco Corona, and Amaury Lendasse. Residual variance estimation in machine learning. Neurocomputing, 72(16–18):3692–3703, October 2009. |
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450 | Tapani Raiko and Matti Tornio. Variational bayesian learning of nonlinear hidden state-space models for model predictive control. Neurocomputing, 72:3704–3712, October 2009. |
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449 | Jarkko Ylipaavalniemi, Eerika Savia, Sanna Malinen, Riitta Hari, Ricardo Vigário, and Samuel Kaski. Dependencies between stimuli and spatially independent fMRI sources: Towards brain correlates of natural stimuli. NeuroImage, 48(1):176–185, October 2009. |
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448 | M.K. Mannerkoski, H.J. Heiskala, K. Van Leemput, L.E. Åberg, R. Raininko, J. Hämäläinen, and T.H. Autti. Children and adolescents with learning and intellectual disabilities and familial need for full-time special-education show regional brain alterations: A voxel-based morphometry study. Pediatric Research, 66(3):306–311, September 2009. |
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447 | B. Fischl, A.A. Stevens, N. Rajendran, B.T.T. Yeo, D.N. Greve, K. Van Leemput, J. Polimeni, S. Kakunoori, R.L. Buckner, J.L. Pacheco, D.H. Salat, J. Melcher, M.P. Frosch, B.T. Hyman, B.R. Rosen P.E. Grant, A.J.W. van der Kouwe, G.C. Wiggins, L.L.Wald, and J.C. Augustinack. Predicting the location of entorhinal cortex from mri. NeuroImage, 47(1):8–17, August 2009. |
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446 | Tomi Janhunen, Emilia Oikarinen, Hans Tompits, and Stefan Woltran. Modularity aspects of disjunctive stable models. Journal of Artificial Intelligence Research, 35:813–857, August 2009. |
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445 | K. Van Leemput. Encoding probabilistic brain atlases using Bayesian inference. IEEE Transactions on Medical Imaging, 28(6):822–837, June 2009. |
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444 | Teemu Hirsimäki, Janne Pylkkönen, and Mikko Kurimo. Importance of high-order n-gram models in morph-based speech recognition. IEEE Transactions on Audio, Speech and Language Processing, 17(4):724–732, May 2009. |
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443 | Yoan Miche, Patrick Bas, Amaury Lendasse, Christian Jutten, and Olli Simula. A feature selection methodology for steganalysis. Traitement du Signal, 26(1):13–30, May 2009. http://apps.isiknowledge.com/full_record.do?product=WOS&search_mode=GeneralSearch&qid=1&SID=Q2CCC8GdiNg2eaCEBEH&page=1&doc=2. |
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442 | Michaela Wrage, Salla Ruosaari, Paul P. Eijk, Jussuf T. Kaifi, Jaakko Hollmén, Emre F. Yekebas, Jacob R. Izbicki, Ruud H. Brakenhoff, Thomas Streichert, Sabine Riethdorf, Bauke Ylstra, Klaus Pantel, and Harriet Wikman. Genomic profiles associated with early micrometastatis in lung cancer: Relevance of 4q deletion. Clinical Cancer Research, 15(5):1566–1574, March 2009. |
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441 | Yoan Miche, Patrick Bas, Amaury Lendasse, Christian Jutten, and Olli Simula. Reliable steganalysis using a minimum set of samples and features. EURASIP Journal on Information Security, 2009(1):1–13 (Article ID 901381), March 2009. http://www.hindawi.com/journals/is/2009/901381.html. |
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440 | Tapani Raiko. Sudoku ihmisen ja koneen ratkaisemana. Arpakannus, magazine of the Finnish Artificial Intelligence Society, 1, February 2009. |
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439 | Antti E. J. Hyvärinen, Tommi Junttila, and Ilkka Niemelä. Incorporating clause learning in grid-based randomized SAT solving. Journal on Satisfiability, Boolean Modeling and Computation, 6:223–244, 2009. |
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438 | Antti Ukkonen, Kai Puolamäki, Aristides Gionis, and Heikki Mannila. A randomized approximation algorithm for computing bucket orders. Information Processing Letters, 109(7):356–359, 2009. |
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437 | Maria Werner and Erik Aurell. A computational study of the lambda-lac mutants. Phys. Biol., 6, 2009. |
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436 | Yasser Roudi, Erik Aurell, and John Hertz. Statistical physics of pairwise probability models. Front. Comput. Neurosci., 3, 2009. |
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435 | Erik Aurell and René Pfitzner. Gaussian belief with dynamic data and in dynamic network. Euro. Phys. Lett., 87, 2009. |
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434 | Emilia Oikarinen and Tomi Janhunen. A translation-based approach to the verification of modular equivalence. Journal of Logic and Computation, 19(4):591–613, 2009. |
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433 | Jani Suomalainen, Jukka Valkonen, and N. Asokan. Standards for security associations in personal networks: a comparative analysis. International Journal of Security and Networks (IJSN), 4(1/2):87–100, 2009. |
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432 | Kai Puolamäki and Alessio Bertone. Introduction to special issue on visual analytics and knowledge discovery. SIGKDD Explorations, 11(2):3–4, 2009. |
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431 | K. Van Leemput, A. Bakkour, T. Benner, G. Wiggins, L.L. Wald, J. Augustinack, B.C. Dickerson, P. Golland, and B. Fischl. Automated segmentation of hippocampal subfields from ultra-high resolution in vivo MRI. Hippocampus, 19:549–557, 2009. |
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430 | J. Wessman, T. Paunio, A. Tuulio-Henriksson, M. Koivisto, T. Partonen, J. Suvisaari, JA Turunen, J. Wedenoja, W. Hennah, O. Pietilainen, J. Lonnqvist, Heikki Mannila, and L. Peltonen. Mixture model clustering of phenotype features reveals evidence for association of dtnbp1 to a specific subtype of schizophrenia. Biological Psychiatry, 66(11):990–996, 2009. |
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429 | Markus Ojala, Niko Vuokko, Aleksi Kallio, Niina Haiminen, and Heikki Mannila. Randomization methods for assessing data analysis results on real-valued matrices. Statistical Analysis and Data Mining, 2(4):209–230, 2009. |
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428 | L.H. Liow, M. Fortelius, K. Lintulaakso, Heikki Mannila, and N. Chr. Stenseth. Lower extinction risk in sleep-or-hide mammals. American Naturalist, 173:264–272, 2009. |
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427 | Muhammed Miah, Gautam Das, Vagelis Hristidis, and Heikki Mannila. Determining attributes to maximize visibility of objects. IEEE Trans. Knowl. Data Eng., 21(7):959–973, 2009. |
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426 | Tomás Feder, Heikki Mannila, and Evimaria Terzi. Approximating the minimum chain completion problem. Information Processing Letters, 109(17):980–985, 2009. |
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425 | Antti Ukkonen, Kai Puolamäki, Aristides Gionis, and Heikki Mannila. A randomized approximation algorithm for computing bucket orders. Information Processing Letters, 109(7):356–359, 2009. |
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424 | Matti Järvisalo. Structure-based satisfiability checking: Analyzing and harnessing the potential. AI Communications, 22(2):117–119, 2009. Thesis summary. |
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423 | Matti Järvisalo and Tommi Junttila. Limitations of restricted branching in clause learning. Constraints, 14(3):325–356, 2009. |
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422 | Panagiotis Papapetrou. Embedding-based subsequence matching in large sequence databases. Doctor of Philosophy Thesis, 2009. |
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421 | Panagiotis Papapetrou, Vassilis Athitsos, George Kollios, and Dimitrios Gunopulos. Reference-based alignment in large sequence databases. Proceedings of the Very Large Databases Endowment (PVLDB), 2(1):205–216, 2009. |
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420 | Panagiotis Papapetrou, George Kollios, Stan Sclaroff, and Dimitrios Gunopulos. Mining frequent arrangements of temporal intervals. Knowledge and Information Systems (KAIS), 21(2), 2009. |
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419 | Petteri Kaski, Patric R. J. Östergård, Olli Pottonen, and Lasse Kiviluoto. A catalogue of the Steiner triple systems of order 19. Bulletin of the Institute of Combinatorics and Its Applications, 57:35–41, 2009. |
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418 | Petteri Kaski and Patric R. J. Östergård. There are 1,132,835,421,602,062,347 nonisomorphic one-factorizations of  . Journal of Combinatorial Designs, 17(2):147–159, 2009. |
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417 | Petteri Kaski and Patric R. J. Östergård. Classification of resolvable balanced incomplete block designs—the unitals on 28 points. Mathematica Slovaca, 59(2):121–136, 2009. |
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416 | Risto M. Hakala and Kaisa Nyberg. A multidimensional linear distinguishing attack on the Shannon cipher. International Journal of Applied Cryptography, 1(3):161–168, 2009. |
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415 | Antti Ajanki, David R. Hardoon, Samuel Kaski, Kai Puolamäki, and John Shawe-Taylor. Can eyes reveal interest?—Implicit queries from gaze patterns. User Modeling and User-Adapted Interaction: The Journal of Personalization Research, 19:307–339, 2009. |
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414 | Farid Benachenhou, Patric Jern, Merja Oja, Göran Sperber, Vidar Blikstad, Panu Somervuo, Samuel Kaski, and Jonas Blomberg. Evolutionary conservation of orthoretroviral long terminal repeats (LTRs) and ab initio detection of single LTRs in genomic data. PLoS ONE, 4(4):e5179, 2009. |
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413 | José Caldas, Nils Gehlenborg, Ali Faisal, Alvis Brazma, and Samuel Kaski. Probabilistic retrieval and visualization of biologically relevant microarray experiments. Bioinformatics, 25:i145–i153, 2009. (ISMB/ECCB 2009). |
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412 | José Caldas, Nils Gehlenborg, Ali Faisal, Alvis Brazma, and Samuel Kaski. Probabilistic retrieval and visualization of biologically relevant microarray experiments. BMC Bioinformatics, 10:P1, 2009. Poster abstract for the 5th ISCB Student Council. Best poster award. |
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411 | Ilkka Huopaniemi, Tommi Suvitaival, Janne Nikkilä, Matej Orešic, and Samuel Kaski. Two-way analysis of high-dimensional collinear data. Data Mining and Knowledge Discovery, 19:261–276, 2009. |
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410 | Jaakko Peltonen, Jarkko Venna, and Samuel Kaski. Visualizations for assessing convergence and mixing of Markov chain Monte Carlo simulations. Computational Statistics and Data Analysis, 53:4453–4470, 2009. |
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409 | Eerika Savia, Kai Puolamäki, and Samuel Kaski. Latent grouping models for user preference prediction. Machine Learning, 74:75–109, 2009. Published online: 3 September 2008. |
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408 | Suvi Savola, Arto Klami, Abhishek Tripathi, Tarja Niini, Massimo Serra, Piero Picci, Samuel Kaski, Diana Zambelli, Katia Scotlandi, and Sakari Knuutila. Combined use of expression and CGH arrays pinpoints novel candidate genes in ewing sarcoma family of tumors. BMC Cancer, 9:17, 2009. |
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407 | Jarkko Ylipaavalniemi, Eerika Savia, Sanna Malinen, Riitta Hari, Ricardo Vigário, and Samuel Kaski. Dependencies between stimuli and spatially independent fMRI sources: Towards brain correlates of natural stimuli. NeuroImage, 48:176–185, 2009. |
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406 | Sven Laur and Sylvain Pasini. User-aided data authentication. International Journal of Security and Networks, 4(1/2):69–86, 2009. |
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405 | Nina Janasik, Timo Honkela, and Henrik Bruun. Text mining in qualitative research: Application of an unsupervised learning method. Organizational Research Methods, 12(3):436–460, 2009. |
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2008 |
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404 | Elia Liitiäinen, Francesco Corona, and Amaury Lendasse. On non-parametric residual variance estimation. Neural Processing Letters, 28(3):155–167, December 2008. |
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403 | Francesco Corona, Satu-Pia Reinikainen, Kari Aaljoki, Annikki Perkkiö, Elia Liitiäinen, Roberto Baratti, Amaury Lendasse, and Olli Simula. Wavelength selection using the measure of topological relevance on the self-organizing map. Journal of Chemometrics, 22(11–12):610–620, November-December 2008. |
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402 | Pauli Miettinen, Taneli Mielikainen, Aristides Gionis, Gautam Das, and Heikki Mannila. The discrete basis problem. IEEE Transactions on Knowledge and Data Engineering, 20(10), October 2008. |
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401 | Nikolaj Tatti. Maximum entropy based significance of itemsets. Knowledge and Information Systems, 17(1), Oct 2008. |
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400 | Mikko Alava, John Ardelius, Erik Aurell, Petteri Kaski, Supriya Krishnamurthy, and Pekka Orponen. Circumspect descent prevails in solving random constraint satisfaction problems. Proceedings of the National Academy of Sciences (USA), 105(40):15253–15257, October 2008. |
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399 | Elia Liitiäinen, Amaury Lendasse, and Francesco Corona. Bounds on the mean power-weighted nearest neighbour distance. Proceedings of the Royal Society A, 464(2097):2293–2301, September 2008. |
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398 | Jarkko Tikka and Jaakko Hollmén. A sequential input selection algorithm for long-term prediction of time series. Neurocomputing, 71(13–15):2604–2615, August 2008. |
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397 | Samuel Myllykangas, Jarkko Tikka, Tom Böhling, Sakari Knuutila, and Jaakko Hollmén. Classification of human cancers based on DNA copy number amplification modeling. BMC Medical Genomics, 1(15), May 2008. |
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396 | Salla Ruosaari, Penny Nymark, Mervi Aavikko, Eeva Kettunen, Sakari Knuutila, Jaakko Hollmén, Hannu Norppa, and Sisko Anttila. Aberrations of chromosome 19 in asbestos-associated lung cancer and in asbestos-induced micronuclei of bronchial epithelial cells in vitro. Carcinogenesis, 29(5):913–917, May 2008. |
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395 | Pei Gao, Antti Honkela, Magnus Rattray, and Neil D. Lawrence. Gaussian process modelling of latent chemical species: applications to inferring transcription factor activities. Bioinformatics, 24(16):i70–i75, 2008. In Proceedings of ECCB 2008. |
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394 | Antti Honkela, Jeremias Seppä, and Esa Alhoniemi. Agglomerative independent variable group analysis. Neurocomputing, 71(7–9):1311–1320, 2008. |
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393 | Alberto Guillén, Dusan Sovilj, Fernando Mateo, Ignacio Rojas, and Amaury Lendasse. Minimizing the delta test for variable selection in regression problems. International Journal of High Performance Systems Architecture, 1(4):269–281, 2008. |
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392 | Supriya Krishnamurthy, Sameh El-Ansary, Erik Aurell, and Seif Haridi. An analytical study of a structured overlay in the presence of dynamic membership. IEEE/ACM Transactions on Networking, 16:814–825, 2008. |
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391 | Emilia Oikarinen and Tomi Janhunen. Achieving compositionality of the stable model semantics for smodels programs. Theory and Practice of Logic Programming, 8(5–6):717–761, 2008. |
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390 | Kai Puolamäki, Sami Hanhijärvi, and Gemma C. Garriga. An approximation ratio for biclustering. Information Processing Letters, 108(2):45–49, 2008. |
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389 | Gemma C. Garriga, Petra Kralj, and Nada Lavrac. Closed sets for labeled data. J. Mach. Learn. Res., 9:559–580, 2008. |
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388 | Kai Puolamäki, Sami Hanhijärvi, and Gemma C. Garriga. An approximation ratio for biclustering. Inf. Process. Lett., 108(2):45–49, 2008. |
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387 | Harri Haanpää, Patric Östergård, and Sándor Szabó. Small  -groups with full-rank factorization. International Journal of Algebra and Computation, 18(6):1019–1034, 2008. |
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386 | Victor Marek, Ilkka Niemelä, and Mirosław Truszczyński. Programs with monotone abstract constraint atoms. Theory and Practice of Logic Programming, 8(2):167–199, 2008. |
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385 | Gerd Brewka, Ilkka Niemelä, and Mirosław Truszczyński. Preferences and nonmonotonic reasoning. AI Magazine, 29(4):69–78, 2008. |
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384 | Ilkka Niemelä. Stable models and difference logic. Annals of Mathematics and Artificial Intelligence, 53(1–4):313–329, 2008. |
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383 | Jukka Valkonen and Kaisa Nyberg. Uudet salausmenetelmät parantavat yksityisyydensuojaa. Tietosuoja, 4:24–27, 2008. In Finnish. |
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382 | Samuel Myllykangas, Siina Junnila, Arto Kokkola, Reija Autio, Ilari Scheinin, Tuula Kiviluoto, Marja-Liisa Karjalainen-Lindsberg, Jaakko Hollmén, Sakari Knuutila, Pauli Puolakkainen, and Outi Monni. Integrated gene copy number and expression microarray analysis of gastric cancer highlights potential target genes. International Journal of Cancer, 123(4):817–825, 2008. |
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381 | Salla Ruosaari, Tuija Hienonen-Kempas, Anne Puustinen, Virinder K. Sarhadi, Jaakko Hollmén, Sakari Knuutila, Juha Saharinen, Harriet Wikman, and Sisko Anttila. Pathways affected by asbestos exposure in normal and tumour tissue of lung cancer patients. BMC Medical Genomics, 1(55), 2008. |
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380 | Zhirong Yang and Jorma Laaksonen. Principal whitened gradient for information geometry. Neural Networks, 21(2-3):232–240, 2008. |
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379 | Mats Sjöberg, Jorma Laaksonen, Timo Honkela, and Matti Pöllä. Inferring semantics from textual information in multimedia retrieval. Neurocomputing, 71(13–15):2576–2586, 2008. |
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378 | Jaana Simola, Jarkko Salojärvi, and Ilpo Kojo. Using hidden markov models to uncover processing states from eye movements in information search tasks. Cognitive Systems Research, 9:237–251, 2008. |
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377 | Kai Puolamäki, Sami Hanhijärvi, and Gemma C. Garriga. An approximation ratio for biclustering. Information Processing Letters, 108(2):45–49, 2008. |
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376 | Robert Gwadera, Aristides Gionis, and Heikki Mannila. Optimal segmentation using tree models. Knowledge and Information Systems, 15(3), 2008. |
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375 | Niina Haiminen, Heikki Mannila, and Evimaria Terzi. Determining significance of pairwise co-occurrences of events in bursty sequences. BMC Bioinformatics, 9(336), 2008. |
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374 | L.H. Liow, Mikael Fortelius, E. Bingham, K. Lintulaakso, Heikki Mannila, L. Flynn, and N.Chr. Stenseth. Higher origination and extinction rates in larger mammals. Proc Natl Acad Sci, 105(16):6097–6102, 2008. |
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373 | P.E. Lundmark, U. Liljedahl, D.I. Boomsma, Heikki Mannila, N.G. Martin, A. Palotie, L. Peltonen, M. Perola, T.D. Spector, and A.-C. Syvanen. Evaluation of hapmap data in six populations of european descent. European Journal of Human Genetics, pages 1–9, 2008. |
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372 | Mikko Kurimo. Puheentunnistus. Puhe ja Kieli, 28(2):73–83, 2008. |
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371 | Matti Järvisalo and Emilia Oikarinen. Extended ASP tableaux and rule redundancy in normal logic programs. Theory and Practice of Logic Programming, 8(5–6):691–716, 2008. |
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370 | Matti Järvisalo and Ilkka Niemelä. The effect of structural branching on the efficiency of clause learning SAT solving: An experimental study. Journal of Algorithms, 63(1–3):90–113, 2008. |
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369 | Erkki Oja. Oja learning rule. Scholarpedia, 3(3):3612, 2008. |
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368 | Petr Tichavský, Zbynek Koldovský, and Erkki Oja. Corrections to "performance analysis of the fastica algorithm and cramér-rao bounds for linear independent component analysis". IEEE Transactions on Signal Processing, 56(4):1715–1716, 2008. |
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367 | Panagiotis Papapetrou, Gary Benson, and George Kollios. Generalized methods for discovering frequent poly-regions in dna. Technical Report, 2008. |
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366 | Petteri Kaski, Patric R. J. Östergård, Svetlana Topalova, and Rosen Zlatarski. Steiner triple systems of order 19 and 21 with subsystems of order 7. Discrete Mathematics, 308(13):2732–2741, 2008. |
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365 | Petteri Kaski, Aleksi Penttinen, and Jukka Suomela. Coordinating concurrent transmissions: a constant-factor approximation of maximum-weight independent set in local conflict graphs. Ad Hoc & Sensor Wireless Networks: An International Journal, 6:239–263, 2008. |
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364 | Petteri Kaski, Patric R. J. Östergård, Svetlana Topalova, and Rosen Zlatarski. Steiner triple systems of order 19 and 21 with subsystems of order 7. Discrete Mathematics, 308(13):2732–2741, 2008. |
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363 | Petteri Kaski and Patric R. J. Östergård. There are exactly five biplanes with  . Journal of Combinatorial Designs, 16(2):117–127, 2008. |
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362 | Yeow Meng Chee and Petteri Kaski. An enumeration of graphical designs. Journal of Combinatorial Designs, 16(1):70–85, 2008. |
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361 | R. Vigário and E. Oja. BSS and ICA in neuroinformatics: From current practices to open challenges. IEEE Rev. Biomed. Eng., 1:50–61, 2008. |
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360 | Arto Klami and Samuel Kaski. Probabilistic approach to detecting dependencies between data sets. Neurocomputing, 72:39–46, 2008. |
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359 | Janne Nikkilä, Marko Sysi-Aho, Andrey Ermolov, Tuulikki Seppänen-Laakso, Olli Simell, Samuel Kaski, and Matej Orešic. Gender dependent progression of systemic metabolic states in early childhood. Molecular Systems Biology, 4:197, 2008. |
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358 | Abhishek Tripathi, Arto Klami, and Samuel Kaski. Simple integrative preprocessing preserves what is shared in data sources. BMC Bioinformatics, 9:111, 2008. |
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357 | Kai Puolamäki, Sami Hanhijärvi, and Gemma C. Garriga. An approximation ratio for biclustering. Information Processing Letters, 108(2):45–49, 2008. |
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356 | Timo Honkela, Ville Könönen, Tiina Lindh-Knuutila, and Mari-Sanna Paukkeri. Simulating processes of concept formation and communication. Journal of Economic Methodology, 15(3):245–259, 2008. |
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355 | Markus Sadeniemi, Kimmo Kettunen, Tiina Lindh-Knuutila, and Timo Honkela. Complexity of European Union languages: A comparative approach. Journal of Quantitative Linguistics, 15(2):185–211, 2008. |
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354 | Jarkko Ylipaavalniemi and Ricardo Vigário. Analyzing consistency of independent components: An fMRI illustration. NeuroImage, 39(1):169–180, January 2008. |
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2007 |
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353 | Zhirong Yang, Zhijian Yuan, and Jorma Laaksonen. Projective non-negative matrix factorization with applications to facial image processing. International Journal on Pattern Recognition and Artificial Intelligence, 21(8):1353–1362, December 2007. |
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352 | Aristides Gionis, Heikki Mannila, Taneli Mielikainen, and Panayiotis Tsaparas. Assessing data mining results via swap randomization. ACM Transactions on Knowledge Discovery from Data (TKDD), 1(3), December 2007. Article No. 14. |
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351 | S. Luyssaert, I. Inglima, R. Ceulemans, P. Ciais, A. J. Dolman, J. Grace, Jaakko Hollmén, B. E. Law, G. Matteucci, D. Papale, S. L. Piao, M. Reichstein, E.-D. Schulze, Mika Sulkava, J. Tang, and I. A. Janssens. Unravelling nitrogen deposition effects on carbon cycling in forests. Eos, Transactions, American Geophysical Union, 88(52), December 2007. Fall Meeting Supplement, Abstract B32B-02. |
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350 | Mathias Creutz, Teemu Hirsimäki, Mikko Kurimo, Antti Puurula, Janne Pylkkönen, Vesa Siivola, Matti Varjokallio, Ebru Arısoy, Murat Saraclar, and Andreas Stolcke. Morph-based speech recognition and modeling of out-of-vocabulary words across languages. ACM Transactions on Speech and Language Processing, 5(1), December 2007. |
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349 | Tomi Janhunen and Emilia Oikarinen. Automated verification of weak equivalence within the smodels system. Theory and Practice of Logic Programming, 7(6):697–744, November 2007. |
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348 | Antti Sorjamaa, Jin Hao, Nima Reyhani, Yongnan Ji, and Amaury Lendasse. Methodology for long-term prediction of time series. Neurocomputing, 70(16-18):2861–2869, October 2007. |
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347 | Rashi Gupta, Salla Ruosaari, Sangita Kulathinal, Jaakko Hollmén, and Petri Auvinen. Microarray image segmentation using additional dye — an experimental study. Molecular and Cellular Probes, 21(5–6):321–328, October–December 2007. |
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346 | Nima Reyhani Yongnan Ji Antti Sorjamaa, Jin Hao and Amaury Lendasse. Methodology for long-term prediction of time series. Neurocomputing, 70(16-18):2861–2869, October 2007. |
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345 | S. Luyssaert, I. A. Janssens, Mika Sulkava, D. Papale, A. J. Dolman, M. Reichstein, Jaakko Hollmén, J. G. Martin, T. Suni, T. Vesala, D. Loustau, B. E. Law, and E. J. Moors. Photosynthesis drives anomalies in net carbon-exchange of pine forests at different latitudes. Global Change Biology, 13(10):2110–2127, October 2007. |
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344 | Markus Koskela, Alan F. Smeaton, and Jorma Laaksonen. Measuring concept similarities in multimedia ontologies: Analysis and evaluations. IEEE Transactions on Multimedia, 9(5):912–922, August 2007. |
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343 | Amaury Lendasse, Erkki Oja, Olli Simula, and Michel Verleysen. Time series prediction competition: The CATS benchmark. Neurocomputing, 70(13-15):2325–2329, August 2007. |
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342 | Harriet Wikman, Salla Ruosaari, Penny Nymark, Virinder K. Sarhadi, Juha Saharinen, Esa Vanhala, Antti Karjalainen, Jaakko Hollmén, Sakari Knuutila, and Sisko Anttila. Gene expression and copy number profiling suggests the importance of allelic imbalance in 19p in asbestos-associated lung cancer. Oncogene, 26(32):4730–4737, July 2007. Nature Publishing Group. |
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341 | Ville Viitaniemi and Jorma Laaksonen. Evaluating the performance in automatic image annotation: example case by adaptive fusion of global image features. Signal Processing: Image Communications, 22(6):557–568, July 2007. |
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340 | Vesa Siivola, Teemu Hirsimäki, and Sami Virpioja. On growing and pruning Kneser-Ney smoothed n-gram models. IEEE Transactions on Audio, Speech and Language Processing, 15(5):1617–1624, July 2007. |
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339 | Hannes Heikinheimo, Mikael Fortelius, Jussi Eronen, and Heikki Mannila. Biogeography of european land mammals shows environmentally distinct and spatially coherent clusters. Journal of Biogeography, 34(6):1053–1064, June 2007. |
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338 | Mika Sulkava, Sebastiaan Luyssaert, Pasi Rautio, Ivan A. Janssens, and Jaakko Hollmén. Modeling the effects of varying data quality on trend detection in environmental monitoring. Ecological Informatics, 2(2):167–176, June 2007. |
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337 | Matthieu Molinier, Jorma Laaksonen, and Tuomas Häme. Detecting man-made structures and changes in satellite imagery with a content-based information retrieval system built on self-organizing maps. IEEE Transactions on Geoscience and Remote Sensing, 45(4):861–874, April 2007. |
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336 | Matthieu Molinier, Jorma Laaksonen, and Tuomas Häme. Change detection. GEO: connexion, 6(3):36–38, March 2007. |
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335 | Antti Honkela, Harri Valpola, Alexander Ilin, and Juha Karhunen. Blind separation of nonlinear mixtures by variational Bayesian learning. Digital Signal Processing, 17(5):914–934, 2007. |
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334 | Esa Alhoniemi, Antti Honkela, Krista Lagus, Jeremias Seppä, Paul Wagner, and Harri Valpola. Compact modeling of data using independent variable group analysis. IEEE Transactions on Neural Networks, 18(6):1762–1776, 2007. |
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333 | Philippe Dumas, Helger Lipmaa, and Johan Wallén. Asymptotic behaviour of a non-commutative rational series with a nonnegative linear representation. Discrete Mathematics and Theoretical Computer Science, 9(1):247–274, 2007. |
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332 | Harri Haanpää and Patric R. J. Östergård. Sets in Abelian groups with distinct sums of pairs. Journal of Number Theory, 123:144–153, 2007. |
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331 | Harri Keski-Säntti, Timo Atula, Jarkko Tikka, Jaakko Hollmén, Antti A. Mäkitie, and Ilmo Leivo. Predictive value of histopathologic parameters in early squamous cell carcinoma of oral tongue. Oral Oncology, 43(10):1007–1013, 2007. |
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330 | Zhirong Yang and Jorma Laaksonen. Multiplicative updates for non-negative projections. Neurocomputing, 71(1-3):363–373, 2007. |
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329 | Juha Karhunen and Tomas Ukkonen. Extending ICA for finding jointly dependent components from two related data sets. Neurocomputing, 70(16-18):2969–2979, 2007. |
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328 | Mathias Creutz and Krista Lagus. Unsupervised models for morpheme segmentation and morphology learning. ACM Transactions on Speech and Language Processing, 4(1), January 2007. |
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327 | Niina Haiminen, Heikki Mannila, and Evimaria Terzi. Comparing segmentations by applying randomization techniques. BMC Bioinformatics, 8(171), 2007. |
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326 | Niina Haiminen and Heikki Mannila. Discovering isochores by least-squares optimal segmentation. Gene, 394(1-2):53–60, 2007. |
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325 | N. Landwehr, Taneli Mielikainen, Lauri Eronen, Hannu Toivonen, and Heikki Mannila. Constrained hidden markov models for population-based haplotyping. BMC Bioinformatics, 8(Suppl 2)(S9), 2007. |
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324 | Alex Hinneburg, Heikki Mannila, Samuli Kaislaniemi, Terttu Nevalainen, and Helena Raumolin-Brunberg. How to handle small samples: Bootstrap and bayesian methods in the analysis of linguistic change. Literary and Linguistic Computing, 22(2):137–150, 2007. |
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323 | Hannes Heikinheimo, Mikael Fortelius, Jussi Eronen, and Heikki Mannila. Biogeography of european land mammals shows environmentally distinct and spatially coherent clusters. Journal of Biogeography, 34(6):1053–1064, 2007. |
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322 | Aristides Gionis, Heikki Mannila, and Panayiotis Tsaparas. Clustering aggregation. ACM Transactions on Knowledge Discovery from Data, 1(1), 2007. |
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321 | Nikolaj Tatti. Distances between data sets based on summary statistics. Journal of Machine Learning Research, 8:131–154, Jan 2007. |
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320 | Amaury Lendasse, Erkki Oja, Olli Simula, and Michel Verleysen. Time series prediction competition: The cats benchmark. Neurocomputing, 70(13-15):2325–2329, 2007. |
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319 | Pekka Orponen. "P = NP" -ongelma ja laskennan vaativuusteoria. Tietojenkäsittelytiede, 26:54–67, 2007. |
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318 | Panagiotis Papapetrou. Constrained-based mining of frequent arrangements of temporal intervals. Master of Arts Thesis, 2007. |
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317 | Petteri Kaski and Patric R. J. Östergård. There exists no symmetric configuration with 33 points and line size 6. Australasian Journal of Combinatorics, 38:273–277, 2007. |
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316 | Tapani Raiko, Harri Valpola, Markus Harva, and Juha Karhunen. Building blocks for variational Bayesian learning of latent variable models. Journal of Machine Learning Research, 8(Jan):155–201, January 2007. |
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315 | Samuel Kaski, Juho Rousu, and Esko Ukkonen. Probabilistic modeling and machine learning in structural and systems biology. BMC Bioinformatics, 8(Suppl 2):S1, 2007. |
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314 | Penny Nymark, Pamela M Lindholm, Mikko V Korpela, Leo Lahti, Salla Ruosaari, Samuel Kaski, Jaakko Hollmen, Sisko Anttila, Vuokko L Kinnula, and Sakari Knuutila. Gene expression profiles in asbestos-exposed epithelial and mesothelial lung cell lines. BMC Genomics, 8:62, 2007. |
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313 | Merja Oja, Jaakko Peltonen, Jonas Blomberg, and Samuel Kaski. Methods for estimating human endogenous retrovirus activities from EST databases. BMC Bioinformatics, 8(Suppl 2):S11, 2007. |
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312 | Jarkko Venna and Samuel Kaski. Comparison of visualization methods for an atlas of gene expression data sets. Information Visualization, 6:139–154, 2007. |
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311 | Satu Elisa Schaeffer. Graph clustering. Computer Science Review, 1(1):27–64, 2007. |
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310 | Teuvo Kohonen and Timo Honkela. Kohonen network. Scholarpedia, 2(1):7421, 2007. |
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309 | Zhijian Yuan Zhirong Yang and Jorma Laaksonen. Projective nonnegative matrix factorization with applications to facial image processing. International Journal on Pattern Recognition & Artificial Intelligence, 21(8):1353–1362, 2007. |
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308 | Kaisa Nyberg. Kryptologia – tiedon turvaamisen tiede. Tietojenkäsittelytiede, 26:32–53, Heinäkuu 2007. |
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2006 |
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307 | Teemu Hirsimäki, Mathias Creutz, Vesa Siivola, Mikko Kurimo, Sami Virpioja, and Janne Pylkkönen. Unlimited vocabulary speech recognition with morph language models applied to finnish. Computer Speech & Language, 20(4):515–541, October 2006. |
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306 | Marco Bozzano, Roberto Bruttomesso, Alessandro Cimatti, Tommi Junttila, Silvio Ranise, Peter van Rossum, and Roberto Sebastiani. Efficient theory combination via boolean search. Information and Computation, 204(10):1493–1525, October 2006. |
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305 | Penny Nymark, Harriet Wikman, Salla Ruosaari, Jaakko Hollmén, Esa Vanhala, Antti Karjalainen, Sisko Anttila, and Sakari Knuutila. Identification of specific gene copy number changes in asbestos-related lung cancer. Cancer Research, 66(11):5737–5743, June 2006. |
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304 | Nikolaj Tatti. Computational complexity of queries based on itemsets. Information Processing Letters, pages 183–187, June 2006. |
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303 | Tomi Janhunen. Some (in)translatability results for normal logic programs and propositional theories. Journal of Applied Non-Classical Logics, 16(1–2):35–86, June 2006. Special issue on implementation of logics. |
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302 | Malcolm Greig, Harri Haanpää, and Petteri Kaski. On the coexistence of conference matrices and near resolvable 2-(2k+1, k, k-1) designs. Journal of Combinatorial Theory, Series A, 113(4):703–711, May 2006. |
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301 | Nikolaj Tatti. Safe projections of binary data sets. Acta Informatica, 42(8–9):617–638, April 2006. |
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300 | Kristian Kersting, Luc De Raedt, and Tapani Raiko. Logical hidden Markov models. Journal of Artificial Intelligence Research, 25:425–456, April 2006. |
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299 | Fabrice Rossi, Amaury Lendasse, Damien François, Vincent Wertz, and Michel Verleysen. Mutual information for the selection of relevant variables in spectrometric nonlinear modelling. Chemometrics and Intelligent Laboratory Systems, 80(2):215–226, February 2006. |
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298 | Alexander Ilin, Harri Valpola, and Erkki Oja. Exploratory analysis of climate data using source separation methods. Neural Networks, 19(2):155–167, 2006. |
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297 | Stefano Marinoni and Hannu H. Kari. Ad hoc routing protocol performance: a realistic simulation based study. Telecommunication Systems, 33(1-3):269–289, 2006. |
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296 | Harri Haanpää and Patric R. J. Östergård. Steinerin kolmikkojärjestelmistä sudokuun. Arkhimedes, 2006(2):18–21, 2006. In Finnish. |
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295 | P. Lindholm, P. Nymark, H. Wikman, K. Salmenkivi, A. Nicholson, M. V. Korpela, S. Kaski, S. Ruosaari, Jaakko Hollmén, E. Vanhala, A. Karjalainen, S. Anttila, V. Kinnula, and S. Knuutila. Asbestos-associated malignancies in the lung and pleura show distinct genetic aberrations. Lung cancer, 54:15, 2006. |
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294 | Samuel Myllykangas, Johan Himberg, Tom Böhling, Balint Nagy, Jaakko Hollmén, and Sakari Knuutila. DNA copy number amplification profiling of human neoplasms. Oncogene, 25(55):7324–7332, 2006. Nature Publishing Group. |
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293 | Sipilä P, Pujianto DA, Shariatmadari R, Nikkilä J, Lehtoranta M, Huhtaniemi IT, and Poutanen M. Differential endocrine regulation of genes enriched in initial segment and distal caput of the mouse epididymis as revealed by genome-wide expression profiling. Biological Reproduction, 75:240–51, 2006. |
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292 | Kai Puolamäki, Mikael Fortelius, and Heikki Mannila. Seriation in paleontological data using Markov chain Monte Carlo methods. PLoS Computational Biology, 2(2):e6, 2006. |
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291 | Armin Biere, Keijo Heljanko, Tommi Junttila, Timo Latvala, and Viktor Schuppan. Linear encodings of bounded LTL model checking. Logical Methods in Computer Science, 2(5:5), 2006. (doi: 10.2168/LMCS-2(5:5)2006). |
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290 | Jussi Rintanen, Keijo Heljanko, and Ilkka Niemelä. Planning as satisfiability: parallel plans and algorithms for plan search. Artificial Intelligence, 170(12-13):1031–1080, 2006. |
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289 | Kai Puolamaki, M. Fortelius, and Heikki Mannila. Seriation in paleontological data using markov chain monte carlo methods. PLoS Comput Biol, 2(2):e6, 2006. |
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288 | Mikael Fortelius, Aristides Gionis, Jukka Jernvall, and Heikki Mannila. Spectral ordering and biochronology of european fossil mammals. Paleobiology, 32(2):206–214, 2006. |
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287 | Stefano Marinoni and Hannu H. Kari. Ad hoc routing protocol performance: a realistic simulation based study. Telecommunication Systems, 33(1–3):269–289, 2006. |
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286 | Harri Haanpää, Matti Järvisalo, Petteri Kaski, and Ilkka Niemelä. Hard satisfiable clause sets for benchmarking equivalence reasoning techniques. Journal on Satisfiability, Boolean Modeling and Computation, 2(1-4):27–46, 2006. |
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285 | Alexander Ilin, Harri Valpola, and Erkki Oja. Exploratory analysis of climate data using source separation methods. Neural Networks, 19(2):155–167, 2006. |
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284 | Zbynek Koldovský, Petr Tichavský, and Erkki Oja. Efficient variant of algorithm fastica for independent component analysis attaining the cramér-rao lower bound. IEEE Transactions on Neural Networks, 17(5):1265–1277, 2006. |
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283 | Erkki Oja and Zhijian Yuan. The fastica algorithm revisited: Convergence analysis. IEEE Transactions on Neural Networks, 17(6):1370–1381, 2006. |
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282 | Jussi Pakkanen, Jukka Iivarinen, and Erkki Oja. The evolving tree-analysis and applications. IEEE Transactions on Neural Networks, 17(3):591–603, 2006. |
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281 | K. Raju, Tapani Ristaniemi, Juha Karhunen, and Erkki Oja. Jammer suppression in ds-cdma arrays using independent component analysis. IEEE Transactions on Wireless Communications, 5(1):77–82, 2006. |
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280 | Petr Tichavský, Zbynek Koldovský, and Erkki Oja. Performance analysis of the fastica algorithm and crame/spl acute/r-rao bounds for linear independent component analysis. IEEE Transactions on Signal Processing, 54(4):1189–1203, 2006. |
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279 | Ching Chang, Raymond Sweha, and Panagiotis Papapetrou. Extending snbench to support a graphical programming interface for a sensor network tasking language (step). Technical Report, 2006. |
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278 | Samuel Kaski. Ydintehtävät kunniaan. Polysteekki, N/A(3):19, 2006. (Commentary on the role of TKK in research in TKK's magazine.). |
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277 | Jarkko Venna and Samuel Kaski. Local multidimensional scaling. Neural Networks, 19:889–899, 2006. |
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276 | Mika Sulkava, Jarkko Tikka, and Jaakko Hollmén. Sparse regression for analyzing the development of foliar nutrient concentrations in coniferous trees. Ecological Modelling, 191(1):118–130, January 2006. |
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275 | M.A. Mayer, V. Karkaletsis, K. Stamatakis, A. Leis, D. Villarroel, C. Thomeczek, M. Labsky, F. Lopez-Ostenero, and T. Honkela. MedIEQ-Quality Labelling of Medical Web Content Using Multilingual Information Extraction. Studies in Health Technology and Informatics, 121:183, 2006. |
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274 | Tomi Janhunen, Ilkka Niemelä, Dietmar Seipel, Patrik Simons, and Jia-Huai You. Unfolding partiality and disjunctions in stable model semantics. ACM Transactions on Computational Logic, 7(1):1–37, January 2006. |
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273 | Erkki Oja and Zhijian Yuan. The fastica algorithm revisited: convergence analysis. IEEE Trans. on Neural Networks, 17(6):1370–1381, 2006. |
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2005 |
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272 | Federico Montesino-Pouzols and Angel Barriga. Medida y estimación activa de las prestaciones de la red. Boletín de la Red Nacional de I+D RedIRIS, 1(74–75):28–31, December 2005. |
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271 | Patrik Floréen, Petteri Kaski, Jukka Kohonen, and Pekka Orponen. Exact and approximate balanced data gathering in energy-constrained sensor networks. Theoretical Computer Science, 344(1):30–46, November 2005. |
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270 | Sebastiaan Luyssaert, Mika Sulkava, Hannu Raitio, and Jaakko Hollmén. Are N and S deposition altering the chemical composition of Norway spruce and Scots pine needles in Finland?. Environmental Pollution, 138(1):5–17, November 2005. |
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269 | Alexander Ilin and Harri Valpola. On the effect of the form of the posterior approximation in variational learning of ICA models. Neural Processing Letters, 22(2):183–204, October 2005. |
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268 | Marco Bozzano, Roberto Bruttomesso, Alessandro Cimatti, Tommi Junttila, Peter van Rossum, Stephan Schulz, and Roberto Sebastiani. MathSAT: Tight integration of SAT and mathematical decision procedures. Journal of Automated Reasoning, 35(1–3):265–293, October 2005. |
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267 | Geoffroy Simon, Amaury Lendasse, Marie Cottrell, Jean-Claude Fort, and Michel Verleysen. Time series forecasting: Obtaining long term trends with self-organizing maps. Pattern Recognition Letters, 26(12):1795–1808, September 2005. |
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266 | Harri Haanpää and Petteri Kaski. The near resolvable 2-(13, 4, 3) designs and thirteen-player whist tournaments. Designs, Codes and Cryptography, 35(3):271–285, June 2005. |
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265 | Sakari Seitz, Mikko Alava, and Pekka Orponen. Focused local search for random 3-satisfiability. Journal of Statistical Mechanics: Theory and Experiment, P06006:1–27, June 2005. |
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264 | Jaana Laiho, Kimmo Raivio, Pasi Lehtimäki, Kimmo Hätönen, and Olli Simula. Advanced analysis methods for 3G cellular networks. IEEE Transactions on Wireless Communications, 4(3):930–942, May 2005. |
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263 | Evan Griffiths and Pekka Orponen. Optimization, block designs and No Free Lunch theorems. Information Processing Letters, 94(2):55–61, April 2005. |
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262 | Amaury Lendasse, Geoffroy Simon, Vincent Wertz, and Michel Verleysen. Fast bootstrap methodology for regression model selection. Neurocomputing, 64:161–181, March 2005. |
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261 | Janne Lundberg, Catharina Candolin, and Hannu H. Kari. Multicast source authentication for limited devices. WSEAS Transactions on Computers, 4(4), 2005. |
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260 | Janne Lundberg, Catharina Candolin, and Hannu H. Kari. Multicast source authentication for limited devices. WSEAS Transactions on Computers, 4(4), 2005. |
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259 | Kimmo Varpaaniemi. On stubborn sets in the verification of linear time temporal properties. Formal Methods in System Design, 26(1):45–67, January 2005. © 2005 Springer Science + Business Media, Inc. (Norwell, MA, USA; Dordrecht, The Netherlands; Berlin, Germany). |
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258 | Janne Lundberg, Catharina Candolin, and Hannu H. Kari. Multicast source authentication for limited devices. WSEAS Transactions on Computers, 4(4), 2005. |
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257 | Harri Haanpää. No 17-player triplewhist tournament has nontrivial automorphisms. Journal of Combinatorial Designs, 13:345–348, 2005. |
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256 | Matti Järvisalo, Tommi Junttila, and Ilkka Niemelä. Unrestricted vs restricted cut in a tableau method for Boolean circuits. Annals of Mathematics and Artificial Intelligence, 44(4):373–399, 2005. |
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255 | Peddinti V. Gopalacharyulu, Erno Lindfors, Catherine Bounsaythip, Teemu Kivioja, Laxman Yetukuri, Jaakko Hollmén, and Matej Orešic. Data integration and visualization system for enabling conceptual biology. Bioinformatics, 21(Suppl.1):i177–i185, 2005. |
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254 | E. Kettunen, A.G. Nicholson, B. Nagy, J.K. Seppänen, T. Ollikainen, G. Ladas, V. Kinnula, M. Dusmet, S. Nordling, Jaakko Hollmén, D. Kamel, P. Goldstraw, and S. Knuutila. L1CAM, INP10, P-cadherin, tPA and ITGB4 over-expression in malignant pleural mesotheliomas revealed by combined use of cDNA and tissue microarray. Carcinogenesis, 26(1):17–25, 2005. |
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253 | Janne Lundberg, Catharina Candolin, and Hannu H. Kari. Multicast source authentication for limited devices. WSEAS Transactions on Computers, 4(4), 2005. |
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252 | Kimmo Varpaaniemi. On stubborn sets in the verification of linear time temporal properties. Formal Methods in System Design, 26(1):45–67, January 2005. © 2005 Springer Science + Business Media, Inc. (Norwell, MA, USA; Dordrecht, The Netherlands; Berlin, Germany). |
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251 | Laura L. Elo, Leo Lahti, Heli Skottman, Minna Kyläniemi, Riitta Lahesmaa, and Tero Aittokallio. Integrating probe-level expression changes across generations of Affymetrix arrays. Nucl. Acids Res., 33(22):e193, 2005. |
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250 | Saara Hyvonen, Heli Junninen, Lauri Laakso, Mika Dal Maso, T. Gronholm, B. Bonn, P. Keronen, P. Aalto, V. Hiltunen, T. Pohja, S. Launiainen, Pentti Hari, Heikki Mannila, and M. Kulmala. A look at aerosol formation using data mining techniques. Atmos. Chem. Phys., 5:3345–3356, 2005. |
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249 | M. Salmenkivi and Heikki Mannila. Using markov chain monte carlo and dynamic programming for event sequence data. Knowl. Inf. Syst., 7(3):267–288, 2005. |
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248 | J.H.L. Hansen, R. Huang, B. Zhou, M. Seadle, J.R. Deller Jr., A.R. Gurijala, Mikko Kurimo, and P. Angkititrakul. Speechfind: Advances in spoken document retrieval for a national gallery of the spoken word. IEEE Transactions on Speech and Audio Processing, 13(5):712–730, 2005. |
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247 | Patrik Floréen, Petteri Kaski, Jukka Kohonen, and Pekka Orponen. Lifetime maximization for multicasting in energy-constrained wireless networks. IEEE Journal on Selected Areas in Communications, 23(1):117–126, January 2005. |
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246 | Petteri Kaski and Patric R. J. Östergård. One-factorizations of regular graphs of order 12. Electronic Journal of Combinatorics, 12:R2, 2005. |
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245 | Petteri Kaski. Isomorph-free exhaustive generation of designs with prescribed groups of automorphisms. SIAM Journal on Discrete Mathematics, 19(3):664–690, 2005. |
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244 | Petteri Kaski. Nonexistence of perfect Steiner triple systems of orders 19 and 21. Bayreuther Mathematische Schriften, 74:130–135, 2005. Proceedings of ALCOMA05, April 3–10, Thurnau, Germany. |
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243 | Samuel Kaski and Janne Nikkilä. Of mice and men and yeast, and dependency exploration. CSCnews, Information Technology for Science in Finland, N/A(4):24–26, 2005. |
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242 | Samuel Kaski, Janne Nikkilä, Janne Sinkkonen, Leo Lahti, Juha Knuuttila, and Christophe Roos. Associative clustering for exploring dependencies between functional genomics data sets. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2(3):203–216, 2005. |
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241 | Samuel Kaski, Janne Sinkkonen, and Arto Klami. Discriminative clustering. Neurocomputing, 69:18–41, 2005. |
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240 | Janne Nikkilä, Christophe Roos, Eerika Savia, and Samuel Kaski. Explorative modeling of yeast stress response and its regulation with gCCA and associative clustering. International Journal of Neural Systems, 15(4):237–246, 2005. |
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239 | Merja Oja, Göran O. Sperber, Jonas Blomberg, and Samuel Kaski. Self-organizing map-based discovery and visualization of human endogenous retroviral sequence groups. International Journal of Neural Systems, 15:163–180, 2005. |
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238 | Jaakko Peltonen and Samuel Kaski. Discriminative components of data. IEEE Transactions on Neural Networks, 16:68–83, 2005. Preprint pdf at http://www.cis.hut.fi/projects/mi/papers/tnn04_preprint.pdf. |
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237 | Timo Honkela. Von Foerster meets Kohonen - approaches to artificial intelligence, cognitive science and information systems development. Kybernetes, 31(1/2):40–53, 2005. |
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236 | Toni Jussila, Keijo Heljanko, and Ilkka Niemelä. BMC via on-the-fly determinization. International Journal on Software Tools for Technology Transfer, 7(2):89 – 101, 2005. |
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2004 |
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235 | Jorma Laaksonen, Markus Koskela, and Erkki Oja. Class distributions on SOM surfaces for feature extraction and object retrieval. Neural Networks, 17(8-9):1121–1133, October-November 2004. |
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234 | Geoffroy Simon, Amaury Lendasse, Marie Cottrell, Jean-Claude Fort, and Michel Verleysen. Double quantization of the regressor space for long-term time series prediction: Method and proof of stability. Neural Networks, 17(8-9):1169–1181, October-November 2004. Special Issue. |
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233 | Alexander Ilin, Harri Valpola, and Erkki Oja. Nonlinear dynamical factor analysis for state change detection. IEEE Transaction on Neural Networks, 15(3):559–575, May 2004. |
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232 | John A. Lee, Amaury Lendasse, and Michel Verleysen. Nonlinear projection with curvilinear distances: Isomap versus curvilinear distance analysis. Neurocomputing, 57:49–76, March 2004. |
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231 | Antti Honkela and Harri Valpola. Variational learning and bits-back coding: an information-theoretic view to Bayesian learning. IEEE Transactions on Neural Networks, 15(4):800–810, 2004. |
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230 | Harri Haanpää. Minimum sum and difference covers of Abelian groups. Journal of Integer Sequences, 7(2):article 04.1.8, 2004. |
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229 | Harri Haanpää, Antti Huima, and Patric R. J. Östergård. Sets in  with distinct sums of pairs. Discrete Applied Mathematics, 138:99–106, 2004. |
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228 | Gerhard Brewka, Ilkka Niemelä, and Tommi Syrjänen. Logic programs with ordered disjunction. Computational Intelligence, 20(2):333–357, 2004. |
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227 | Eeva Kettunen, Sisko Anttila, Jouni K. Seppänen, Antti Karjalainen, Henrik Edgren, Irmeli Lindström, Reijo Salovaara, Anna-Maria Nissén, Jarmo Salo, Karin Mattson, Jaakko Hollmén, Sakari Knuutila, and Harriet Wikman. Differentially expressed genes in nonsmall cell lung cancer: expression profiling of cancer-related genes in squamous cell lung cancer. Cancer Genetics and Cytogenetics, 149(2):98–106, 2004. |
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226 | Harriet Wikman, Jouni K. Seppänen, Virinder K. Sarhadi, Eeva Kettunen, Kaisa Salmenkivi, Eeva Kuosma, Katri Vainio-Siukola, Balint Nagy, Antti Karjalainen, Thanos Sioris, Jarmo Salo, Jaakko Hollmén, Sakari Knuutila, and Sisko Anttila. Caveolins as tumor markers in lung cancer detected by combined use of cDNA and tissue microarrays. Journal of Pathology, 203:584–593, 2004. |
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225 | Krista Lagus, Samuel Kaski, and Teuvo Kohonen. Mining massive document collections by the WEBSOM method. Information Sciences, 163(1–3):135–156, 2004. |
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224 | Eric de Bodt, Amaury Lendasse, Pierre Cardon, and Michel Verleysen. Self-organizing feature maps for the classification of investment funds. Journal of Economic and Social Systems, 17(1-2):183–195, 2004. |
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223 | Matti Järvisalo. Lauselogiikan toteutuvuustarkastus: käytännönläheistä teoriaa. Tietojenkäsittelytiede, 22:47–63, 2004. In Finnish. |
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222 | Jorma Laaksonen, Markus Koskela, and Erkki Oja. Class distributions on som surfaces for feature extraction and object retrieval. Neural Networks, 17(8-9):1121–1133, 2004. |
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221 | Erkki Oja, Stefan Harmeling, and Luis B. Almeida. Independent component analysis and beyond. Signal Processing, 84(2):215–216, 2004. |
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220 | Erkki Oja and Mark D. Plumbley. Blind separation of positive sources by globally convergent gradient search. Neural Computation, 16(9):1811–1825, 2004. |
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219 | Jussi Pakkanen, Jukka Iivarinen, and Erkki Oja. The evolving tree - a novel self-organizing network for data analysis. Neural Processing Letters, 20(3):199–211, 2004. |
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218 | Petteri Kaski and Patric R. J. Östergård. Enumeration of balanced ternary designs. Discrete Applied Mathematics, 138(1–2):133–141, 2004. |
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217 | Petteri Kaski and Patric R. J. Östergård. Miscellaneous classification results for 2-designs. Discrete Mathematics, 280(1–3):65–75, 2004. |
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216 | Petteri Kaski. Packing Steiner trees with identical terminal sets. Information Processing Letters, 91(1):1–5, 2004. |
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215 | Petteri Kaski and Patric R. J. Östergård. The Steiner triple systems of order 19. Mathematics of Computation, 73:2075–2092, 2004. |
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214 | Petteri Kaski and Patric R. J. Östergård. There exist nonisomorphic STS(19) with equivalent point codes. Journal of Combinatorial Designs, 12(6):443–448, 2004. |
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213 | K.-R. Müller, R. Vigário, F. Meinecke, and A. Ziehe. Blind source separation techniques for decomposing event related brain signals. Int. Journal of Bifurcation and Chaos, 14(2):773–792, 2004. |
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212 | Samuel Kaski and Janne Sinkkonen. Principle of learning metrics for exploratory data analysis. Journal of VLSI Signal Processing, special issue on Machine Learning for Signal Processing, 37:177–188, 2004. |
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211 | Krista Lagus, Samuel Kaski, and Teuvo Kohonen. Mining massive document collections by the WEBSOM method. Information Sciences, 163:135–156, 2004. |
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210 | Jaakko Peltonen, Arto Klami, and Samuel Kaski. Improved learning of Riemannian metrics for exploratory analysis. Neural Networks, 17:1087–1100, 2004. Invited paper. Preprint postscript file at http://www.cis.hut.fi/projects/mi/papers/nn04_preprint.ps.gz. |
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209 | Sebastiaan Luyssaert, Mika Sulkava, Hannu Raitio, and Jaakko Hollmén. Evaluation of forest nutrition based on large-scale foliar surveys: are nutrition profiles the way of the future?. Journal of Environmental Monitoring, 6(2):160–167, 2004. |
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208 | Timo Latvala and Heikki Tauriainen. Improved on-the-fly verification with testers. Nordic Journal of Computing, 11(2):148–164, 2004. |
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2003 |
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207 | Seppo Ovaska, Olli Vainio, and Matti Pöllä. Adaptive filtering using multiplicative general parameters for zero-crossing detection. IEEE Transactions on Industrial Electronics, 50(6):1340–1342, December 2003. |
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206 | Jiří Šíma and Pekka Orponen. General purpose computation with neural networks: A survey of complexity theoretic results. Neural Computation, 15(12):2727–2778, December 2003. |
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205 | Pekka Orponen. Tietotekniikkaa ennen tietokoneita — Alan Turing ja tietotekniikan kiehtovat alkuvaiheet. Tietoa, pages 4–6, November 2003. |
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204 | Ilkka Pyysiainen, Marjaana Lindeman, and Timo Honkela. Counterintuitiveness as the hallmark of religiosity. Religion, 33(4):341–355, October 2003. |
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203 | Federico Montesino-Pouzols. Internet multimedia systems architecture/arquitectura de los sistemas multimedia de internet. Boletín de la Red Nacional de I+D RedIRIS, 1(65):23–32, September 2003. |
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202 | Jiří Šíma and Pekka Orponen. Exponential transients in continuous-time Liapunov systems. Theoretical Computer Science, 306(1–3):353–372, September 2003. |
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201 | Dimitrios Gunopulos, Roni Khardon, Heikki Mannila, Sanjeev Saluja an Hannu Toivonen, and Ram Sewak Sharma. Discovering all most specific sentences. ACM Transactions on Database Systems, 28(2):140 – 174, June 2003. |
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200 | Jiří Šíma and Pekka Orponen. Continuous-time symmetric Hopfield nets are computationally universal. Neural Computation, 15(3):693–733, March 2003. |
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199 | Tomi Janhunen. Evaluating the effect of semi-normality on the expressiveness of defaults. Artificial Intelligence, 144(1–2):233–250, March 2003. |
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198 | Kimmo Varpaaniemi. Towards ambitious approximation algorithms in stubborn set optimization. Fundamenta Informaticae (Annales Societatis Mathematicae Polonae, Series IV), 54(2–3):279–294, February 2003. IOS Press, Amsterdam, The Netherlands. |
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197 | Kimmo Varpaaniemi. Towards ambitious approximation algorithms in stubborn set optimization. Fundamenta Informaticae (Annales Societatis Mathematicae Polonae, Series IV), 54(2–3):279–294, February 2003. IOS Press, Amsterdam, The Netherlands. |
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196 | Antti Honkela, Harri Valpola, and Juha Karhunen. Accelerating cyclic update algorithms for parameter estimation by pattern searches. Neural Processing Letters, 17(2):191–203, 2003. |
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195 | Harri Valpola, Erkki Oja, Alexander Ilin, Antti Honkela, and Juha Karhunen. Nonlinear blind source separation by variational Bayesian learning. IEICE Transactions on Fundamentals of Electronics, Communications and Computer Sciences, E86-A(3):532–541, 2003. |
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194 | Evan Griffiths. Limit lemmas and jump inversion in the enumeration degrees. Archive for Mathematical Logic, 42(6), 2003. |
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193 | Harri Haanpää and Patric R. J. Östergård. Classification of whist tournaments with up to 12 players. Discrete Applied Mathematics, 129:399–407, 2003. |
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192 | Keijo Heljanko and Ilkka Niemelä. Bounded LTL model checking with stable models. Theory and Practice of Logic Programming, 3(4&5):519–550, 2003. Also available as (CoRR: arXiv:cs.LO/0305040). |
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191 | Dmitry Pavlov, Heikki Mannila, and Padhraic Smyth. Beyond independence: probabilistic methods for query approximation on binary transaction data. IEEE Trans. Knowl. Data Eng, 15(6):1409–1421, 2003. |
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190 | Matti Aksela, Ramunas Girdziusas, Jorma Laaksonen, Erkki Oja, and Jari Kangas. Methods for adaptive combination of classifiers with application to recognition of handwritten characters. IJDAR, 6(1):23–41, 2003. |
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189 | Maria Funaro, Erkki Oja, and Harri Valpola. Independent component analysis for artefact separation in astrophysical images. Neural Networks, 16(3-4):469–478, 2003. |
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188 | Te-Won Lee, Jean-Francois Cardoso, Erkki Oja, and Shun ichi Amari. Introduction to special issue on independent components analysis. Journal of Machine Learning Research, 4:1175–1176, 2003. |
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187 | Pekka Orponen. Mitä tietojenkäsittelyteoriaan kuuluu?. Tietojenkäsittelytiede, 19:15–28, 2003. |
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186 | Panagiotis Papapetrou. Discovering aggregate usage profiles using clustering methods. B.Sc. Thesis, 2003. |
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185 | Petteri Kaski, Luis B. Morales, Patric R. J. Östergård, David A. Rosenblueth, and Carlos Velarde. Classification of resolvable 2-(14,7,12) and 3-(14,7,5) designs. Journal of Combinatorial Mathematics and Combinatorial Computing, 47:65–74, 2003. |
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184 | J. Särelä and R. Vigário. Overlearning problem in high-order ICA: analysis and solutions. Journal of Machine Learning Research, 4:1447–1469, 2003. |
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183 | Samuel Kaski, Janne Nikkilä, Merja Oja, Jarkko Venna, Petri Törönen, and Eero Castrén. Trustworthiness and metrics in visualizing similarity of gene expression. BMC Bioinformatics, 4(48), 2003. |
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182 | Merja Oja, Samuel Kaski, and Teuvo Kohonen. Bibliography of self-organizing map (SOM) papers: 1998–2001 addendum. Neural Computing Surveys, 3:1–156, 2003. Available in electronic form at http://www.soe.ucsc.edu/NCS/. |
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2002 |
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181 | Amaury Lendasse, John A. Lee, Vincent Wertz, and Michel Verleysen. Forecasting electricity consumption using nonlinear projection and self-organizing maps. Neurocomputing, 48(1-4):299–311, October 2002. |
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180 | Sami Brandt, Jorma Laaksonen, and Erkki Oja. Statistical shape features for content-based image retrieval. Journal of Mathematical Imaging and Vision, 17(2):187–198, September 2002. |
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179 | J. Han, Russ B. Altman, V. Kumar, Heikki Mannila, and D. Pregibon. Emerging scientific applications in data mining. Communications of the ACM, 45(8):54–58, August 2002. |
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178 | Mikko Kurimo. Thematic indexing of spoken documents by using self-organizing maps. Speech Communication, 38(1-2):29–44, August 2002. |
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177 | Jorma Laaksonen, Markus Koskela, and Erkki Oja. PicSOM—Self-organizing image retrieval with MPEG-7 content descriptions. IEEE Transactions on Neural Networks, Special Issue on Intelligent Multimedia Processing, 13(4):841–853, July 2002. |
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176 | Kimmo Varpaaniemi. Minimizing the number of successor states in the stubborn set method. Fundamenta Informaticae (Annales Societatis Mathematicae Polonae, Series IV), 51(1–2):215–234, May 2002. IOS Press, Amsterdam, The Netherlands. |
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175 | Kimmo Varpaaniemi. Minimizing the number of successor states in the stubborn set method. Fundamenta Informaticae (Annales Societatis Mathematicae Polonae, Series IV), 51(1–2):215–234, May 2002. IOS Press, Amsterdam, The Netherlands. |
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174 | Pekka Nikander, Catharina Candolin, and Janne Lundberg. From address orientation to host orientation. Réseaux et systèmes répartis, calculateurs parallèles, ISSN 1260-3198, Special Issue on Mobility and Internet, 13, 2002. |
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173 | Catharina Candolin. Ad hoc -johtamisverkot. Maanpuolustuksen aikakauslehti, 1(1), 2002. |
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172 | Pekka Nikander, Catharina Candolin, and Janne Lundberg. From address orientation to host orientation. Réseaux et systèmes répartis, calculateurs parallèles, ISSN 1260-3198, Special Issue on Mobility and Internet, 13, 2002. |
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171 | Catharina Candolin. Ad hoc -johtamisverkot. Maanpuolustuksen aikakauslehti, 1(1), 2002. |
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170 | Patrik Simons, Ilkka Niemelä, and Timo Soininen. Extending and implementing the stable model semantics. Artificial Intelligence, 138(1–2):181–234, 2002. |
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169 | Tarja Niini, Kim Vettenranta, Jaakko Hollmén, Marcelo L. Larramendy, Yan Aalto, Harriet Wikman, Bálint Nagy, Jouni K. Seppänen, Anna Ferrer Salvador, Heikki Mannila, Ulla M. Saarinen-Pihkala, and Sakari Knuutila. Expression of myeloid-specific genes in childhood acute lymphoblastic leukemia — a cDNA array study. Leukemia, 16(11):2213–2221, 2002. Nature Publishing Group. |
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168 | Harriet Wikman, Eeva Kettunen, Jouni K. Seppänen, Antti Karjalainen, Jaakko Hollmén, Sisko Anttila, and Sakari Knuutila. Identification of differentially expressed genes in pulmonary adenocarcinoma by using a cDNA array. Oncogene, 21(37):5804–5813, 2002. Nature Publishing Group. |
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167 | Ying Zhu, Jaakko Hollmén, Riikka Räty, Yan Aalto, Balint Nagy, Erkki Elonen, Juha Kere, Heikki Mannila, Kaarle Franssila, and Sakari Knuutila. Investigatory and analytical approaches to differential gene expression profiling in mantle cell lymphoma. British Journal of Haematology, 119(4):905–915, 2002. |
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166 | Jaakko Peltonen. Itseorganisoituvat kartat oppivissa metriikoissa. Tekniikan Akateemiset, 5/2002, 2002. |
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165 | Krista Lagus. Text retrieval using self-organized document maps. Neural Processing Letters., 15(1):21–29, 2002. |
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164 | Heikki Mannila, A. Patrikainen, J. Seppänen, and J. Kere. Long-range control of expression in yeast. Bioinformatics, 18(3):482–483, 2002. |
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163 | M. Salmenkivi, J. Kere, and Heikki Mannila. Genome segmentation using piecewise constant intensity models and reversible jump mcmc. Bioinformatics, 18(Supplement 2):S211–S218, 2002. (European Computational Biology Conference 2002). |
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162 | Y. Zhu, J. Hollmen, R. Raty, Y. Aalto, B. Nagy, E. Elonen, J. Kere, Heikki Mannila, K. Franssila, and S. Knuutila. Investigatory and analytical approaches to differential gene expression profiling in mantle cell lymphoma. Br J Haematol., 119(4):905–915, 2002. |
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161 | T. Niini, K. Vettenranta, J. Hollmen, M.L. Larramendy, Y. Aalto, H. Wikman, B. Nagy, J.K. Seppänen, A.F. Salvador, Heikki Mannila, U.M. Saarinen-Pihkala, and S. Knuutila. Expression of myeloid-specific genes in childhood acute lumpoblastic leukemia – a cdna array study. Leukemia, 16:2213–2221, 2002. |
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160 | P. Onkamo, V. Ollikainen, P. Sevon, H. Toivonen, Heikki Mannila, and J. Kere. Association analysis for quantitative traits by data mining: Qhpm. The Annals of Human Genetics, 66:419–429, 2002. |
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159 | Sami S. Brandt, Jorma Laaksonen, and Erkki Oja. Statistical shape features for content-based image retrieval. Journal of Mathematical Imaging and Vision, 17(2):187–198, 2002. |
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158 | Erkki Oja. Unsupervised learning in neural computation. Theor. Comput. Sci., 287(1):187–207, 2002. |
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157 | Patric R. J. Östergård and Petteri Kaski. Enumeration of 2-(9,3,lambda) designs and their resolutions. Designs, Codes and Cryptography, 27:131–137, 2002. |
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156 | Janne Nikkilä, Petri Törönen, Samuel Kaski, Jarkko Venna, Eero Castrén, and Garry Wong. Analysis and visualization of gene expression data using self-organizing maps. Neural Networks, 15:953–966, 2002. |
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155 | Ville Ollikainen, Christer Bäckström, and Samuel Kaski. Electronic editor: Automatic content-based sequential compilation of newspaper articles. Neurocomputing, 43:91–106, 2002. |
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154 | Jarkko Salojärvi and Samuel Kaski. Mixture density from autonomous experts. International Journal of Knowledge Based Intelligent Engineering Systems, 6:48–55, 2002. |
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153 | Janne Sinkkonen and Samuel Kaski. Clustering based on conditional distributions in an auxiliary space. Neural Computation, 14:217–239, 2002. |
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152 | George Legrady and Timo Honkela. Pockets full of memories: an interactive museum installation. Visual Communication, 1(2):163–169, 2002. |
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2001 |
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151 | Marko Mäkelä. Rinnakkaisuus hallintaan—formaalit menetelmät mutkikkaiden järjestelmien suunnittelun apuna. Prosessori, pages 68–71, November 2001. Erikoisnumero: elektroniikan suunnittelu (ES). |
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150 | Marko Mäkelä. Rinnakkaisuus hallintaan—formaalit menetelmät mutkikkaiden järjestelmien suunnittelun apuna. Prosessori, pages 68–71, November 2001. Erikoisnumero: elektroniikan suunnittelu (ES). |
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149 | Jorma Laaksonen, Markus Koskela, Sami Laakso, and Erkki Oja. Self-organizing maps as a relevance feedback technique in content-based image retrieval. Pattern Analysis & Applications, 4(2+3):140–152, June 2001. |
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148 | Stefan Brass, Jürgen Dix, Ilkka Niemelä, and T.C. Przymusinski. On the equivalence of the static and disjunctive well-founded semantics and its computation. Theoretical Computer Science, 258(1–2):523–553, May 2001. |
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147 | Amaury Lendasse, Eric de Bodt, Vincent Wertz, and Michel Verleysen. Nonlinear financial time series forecasting - application to the bel 20 stock market index. European Journal of Economic and Social Systems, 14(1):81–92, February 2001. |
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146 | Galina T. Bogdanova, Andries E. Brouwer, Stoian N. Kapralov, and Patric R.J. Östergård. Error-correcting codes over an alphabet of four elements. Designs, Codes and Cryptography, 23(3):333–342, 2001. |
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145 | Galina T. Bogdanova and Patric R.J. Östergård. Bounds on codes over an alphabet of five elements. Discrete Mathematics, 240(1–3):13–19, 2001. |
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144 | Alexander A. Davydov and Patric R.J. Östergård. Linear codes with covering radius  and codimension  . IEEE Transactions on Information Theory, 47(1):416–421, 2001. |
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143 | Alexander A. Davydov and Patric R.J. Östergård. Recursive constructions of complete caps. Journal of Statistical Planning and Inference, 95(1–2):167–173, 2001. |
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142 | T. Aaron Gulliver and Patric R.J. Östergård. Improved bounds for ternary linear codes of dimension 8 using tabu search. Journal of Heuristics, 7(1):37–46, 2001. |
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141 | Patric R.J. Östergård. A new algorithm for the maximum-weight clique problem. Nordic Journal of Computing, 8(4):424–436, 2001. |
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140 | Patric R.J. Östergård. There are 270,474,142 nonisomorphic 2-(9,4,6) designs. Journal of Combinatorial Mathematics and Combinatorial Computing, 37(1):173–176, 2001. |
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139 | Patric R.J. Östergård and Uri Blass. On the size of optimal binary codes of length 9 and covering radius 1. IEEE Transactions on Information Theory, 47(6):2556–2557, 2001. |
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138 | Patric R.J. Östergård and William D. Weakley. Values of domination numbers of the queen's graph. The Electronic Journal of Combinatorics, 8(1), 2001. |
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137 | Amaury Lendasse, John A. Lee, Vincent Wertz, Eric de Bodt, and Michel Verleysen. Dimension reduction of technical indicators for the prediction of financial time series, application to the bel 20 market index. European Journal of Economic and Social Systems, 15(2):31–48, 2001. |
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136 | H. Toivonen, K. Vasko, Heikki Mannila, A. Korhola, and H. Olander. Applying bayesian statistics to organism-based environmental reconstruction. Ecological Applications, 11(2):618–630, 2001. |
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135 | M. Koivisto and Heikki Mannila. Offspring risk and sibling risk for multilocus traits. Human Heredity, 51:209–216, 2001. |
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134 | P. Sevon, V. Ollikainen, P. Onkamo, H. Toivonen, Heikki Mannila, and J. Kere. Mining associations between genetic markers, phenotypes and covariates. Genetic Epidemiology, 21(Suppl 1):S588 – S593, 2001. |
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133 | B. Bollobas, G. Das, D. Gunopulos, and H. Mannila. Time-series similarity problems and well-separated geometric sets. Nordic Journal on Computing, 8(4):409–423, 2001. |
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132 | Visa Koivunen, Mihai Enescu, and Erkki Oja. Adaptive algorithm for blind separation from noisy time-varying mixtures. Neural Computation, 13(10):2339–2357, 2001. |
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131 | Jorma Laaksonen, Markus Koskela, Sami Laakso, and Erkki Oja. Self-organising maps as a relevance feedback technique in content-based image retrieval. Pattern Anal. Appl., 4(2-3):140–152, 2001. |
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130 | Timo Ojala, Kimmo Valkealahti, Erkki Oja, and Matti Pietikäinen. Texture discrimination with multidimensional distributions of signed gray-level differences. Pattern Recognition, 34(3):727–739, 2001. |
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129 | Vuokko Vuori, Jorma Laaksonen, Erkki Oja, and Jari Kangas. Experiments with adaptation strategies for a prototype-based recognition system for isolated handwritten characters. IJDAR, 3(3):150–159, 2001. |
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128 | Petteri Kaski and Patric R. J. Östergård. There exists no (15,5,4) RBIBD. Journal of Combinatorial Designs, 9(5):357–362, 2001. |
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127 | Samuel Kaski, Janne Sinkkonen, and Jaakko Peltonen. Bankruptcy analysis with self-organizing maps in learning metrics. IEEE Transactions on Neural Networks, 12:936–947, 2001. Preprint postscript at http://www.cis.hut.fi/projects/mi/papers/trnn00_preprint.ps.gz. |
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126 | Leo Ojala, Nisse Husberg, and Teemu Tynjälä. Modelling and Analysing a Distributed Dynamic Channel Allocation Algorithm for Mobile Computing Using High-Level Net Methods. Software Tools for Technology Transfer, 3, 2001. |
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125 | Tommi A. Junttila. Computational complexity of the Place/Transition-net symmetry reduction method. Journal of Universal Computer Science, 7(4):307–326, 2001. |
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2000 |
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124 | Jorma Laaksonen, Markus Koskela, Sami Laakso, and Erkki Oja. PicSOM – Content-based image retrieval with self-organizing maps. Pattern Recognition Letters, 21(13-14):1199–1207, December 2000. |
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123 | Kimmo Varpaaniemi. Stable models for stubborn sets. Fundamenta Informaticae (Annales Societatis Mathematicae Polonae, Series IV), 43(1–4):355–375, August 2000. IOS Press, Amsterdam, The Netherlands. |
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122 | Kimmo Varpaaniemi. Stable models for stubborn sets. Fundamenta Informaticae (Annales Societatis Mathematicae Polonae, Series IV), 43(1–4):355–375, August 2000. IOS Press, Amsterdam, The Netherlands. |
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121 | H. Toivonen, P. Onkamo, K. Vasko, V. Ollikainen, P. Sevon, Heikki Mannila, M. Herr, and J. Kere. Data mining applied to linkage disequilibrium mapping. American Journal of Human Genetics, 67(1):133 – 145, July 2000. |
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120 | Tuomas Aura and Johan Lilius. A causal semantics for time petri nets. Theoretical Computer Science, 243(1–2):409–447, 2000. |
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119 | Alexander Davydov and Patric R.J. Östergård. New quaternary linear codes with covering radius 2. Finite Fields and Their Applications, 6(2):164–174, 2000. |
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118 | Alexander Davydov and Patric R.J. Östergård. On saturating sets in small projective geometries. European Journal of Combinatorics, 21(5):563–570, 2000. |
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117 | T. Aaron Gulliver and Patric R.J. Östergård. New binary linear codes. Ars Combinatoria, 56(1):105–112, 2000. |
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116 | Filip Karlemo and Patric R.J. Östergård. On sliding block puzzles. Journal of Combinatorial Mathematics and Combinatorial Computing, 34(1):97–107, 2000. |
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115 | Kari J. Nurmela. Conjecturally optimal coverings of an equilateral triangle with up to 36 equal circles. Experimental Mathematics, 9(1):241–250, 2000. |
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114 | Patric R.J. Östergård. Classification of binary/ternary one-error correcting codes. Discrete Mathematics, 223(1–3):253–262, 2000. |
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113 | Patric R.J. Östergård. Enumeration of  designs. The Australasian Journal of Combinatorics, 22(1):227–231, 2000. |
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112 | Patric R.J. Östergård. Computer search for small complete caps. Journal of Geometry, 69(1–2):172–179, 2000. |
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111 | Patric R.J. Östergård and William D. Weakley. Classification of binary covering codes. Journal of Combinatorial Designs, 8(6):391–401, 2000. |
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110 | Harri Haanpää. A lower bound for a Ramsey number. Congressus Numerantium, 144:189–191, 2000. |
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109 | Heikki Mannila. Theoretical frameworks for data mining. SIGKDD Explorations, 1(2):30–32, January 2000. |
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108 | T. Laitinen, V. Ollikainen, C. Lazaro, P. Kauppi, R de Cid, J.M. Anto, X. Estivill, H. Lokki, Heikki Mannila, L.A. Laitinen, and J. Kere. Association study of the chromosomal region containing the FCER2 gene suggests it has a regulatory role in atopic disorders. American Journal on Respiratory and Critical Care Medicine, 161:700–706, 2000. |
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107 | P. Kauppi, T. Laitinen, V. Ollikainen, Heikki Mannila, L.A. Laitinen, and J. Kere. The ILR9 region contribution in asthma is supported by genetic association in an isolated population. European Journal of Human Genetics, 8:788–792, 2000. |
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106 | Aapo Hyvärinen and Erkki Oja. Independent component analysis: algorithms and applications. Neural Networks, 13(4-5):411–430, 2000. |
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105 | Jorma Laaksonen, Markus Koskela, Sami Laakso, and Erkki Oja. Picsom - content-based image retrieval with self-organizing maps. Pattern Recognition Letters, 21(13-14):1199–1207, 2000. |
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104 | Ricardo Vigário and Erkki Oja. Independence: a new criterion for the analysis of the electromagnetic fields in the global brain?. Neural Networks, 13(8-9):891–907, 2000. |
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103 | A. K. Barros, R. Vigário, V. Jousmäki, and N. Ohnishi. Extraction of periodic signals from multi-channel bioelectrical measurements. IEEE Trans. Biomed. Eng., 47(5):583–588, 2000. |
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102 | R. Vigário and E. Oja. Independence: a new criterion for the analysis of the electromagnetic fields in the global brain. Neural Networks, 13(8-9):891–908, 2000. |
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101 | R. Vigário, J. Särelä, M. Hämäläinen, and E. Oja. Independent component approach to the analysis of EEG and MEG recordings. IEEE Trans. Biomed. Eng., 47:589–593, 2000. |
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100 | Samuel Kaski, Jarkko Venna, and Teuvo Kohonen. Coloring that reveals cluster structures in multivariate data. Australian Journal of Intelligent Information Processing Systems, 6:82–88, 2000. |
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99 | Teuvo Kohonen, Samuel Kaski, Krista Lagus, Jarkko Salojärvi, Jukka Honkela, Vesa Paatero, and Antti Saarela. Self organization of a massive document collection. IEEE Transactions on Neural Networks, 11:574–585, 2000. |
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98 | Timo Latvala and Keijo Heljanko. Coping with strong fairness. Fundamenta Informaticae, 43(1–4):175–193, 2000. |
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1999 |
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97 | Krista Lagus, Timo Honkela, Samuel Kaski, and Teuvo Kohonen. WEBSOM for textual data mining. Artificial Intelligence Review, 13(5/6):345–364, December 1999. |
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96 | M. Klemettinen, H. Mannila, and H. Toivonen. Rule discovery in telecommunication alarm data. Journal of Network and Systems Management, 7(4):395–423, December 1999. |
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95 | Krista Lagus, Timo Honkela, Samuel Kaski, and Teuvo Kohonen. WEBSOM for textual data mining. Artificial Intelligence Review, 13(5/6):345–364, December 1999. |
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94 | Tommi A. Junttila. Finding symmetries of algebraic system nets. Fundamenta Informaticae, 37(3):269–289, February 1999. |
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93 | Ilkka Niemelä. Logic programming with stable model semantics as a constraint programming paradigm. Annals of Mathematics and Artificial Intelligence, 25(3,4):241–273, 1999. |
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92 | Esa Alhoniemi, Jaakko Hollmén, Olli Simula, and Juha Vesanto. Process monitoring and modeling using the self-organizing map. Integrated Computer Aided Engineering, 6(1):3–14, 1999. |
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91 | Keijo Heljanko. Using logic programs with stable model semantics to solve deadlock and reachability problems for 1-safe Petri nets. Fundamenta Informaticae, 37(3):247–268, 1999. |
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90 | M. Klemettinen, H. Mannila, and H. Toivonen. Exploration of interesting findings in tasa. Information and Software Technology, 41(9):557–567, 1999. |
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89 | I. Hovatta, T. Varilo, J. Suvisaari, J.D. Terwilliger, V. Ollikainen, R. Arajärvi, H. Juvonen, M.-L. Kokko-Sahin, L. Väisänen, Heikki Mannila, J. Lönnqvist, and L. Peltonen. A genomewide screen for schizophrenia genes in an isolated finnish subpopulation, suggesting multiple susceptibility loci. American Journal of Human Genetics, 65, 1999. |
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88 | R. Khardon, Heikki Mannila, and D. Roth. Reasoning with examples: propositional formulae and database dependencies. Acta Informatica, 36(4):267–286, 1999. |
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87 | Y. Aumann, R. Feldman, O. Liphstat, and Heikki Mannila. Borders: An efficient algorithm for association generation in dynamic databases. Journal of Intelligent Information Systems, 12(1):61–73, 1999. |
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86 | H.G. Gyllenberg, M. Gyllenberg, T. Koski, T. Lund, Heikki Mannila, and C. Meek. Singling out ill-fit items in a classification. application to the taxonomy of Enterobacteriaceae. Archives of Control Sciences, 9:97–105, 1999. |
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85 | A. Korhola, J. Weckström, H. Seppä, H.J.B. Birks, S.M. Peglar, H. Toivonen, K. Vasko, and Heikki Mannila. Quantitative holocene records from sedimentary remains of aquatic organisms and pollen in northern fennoscandia. Terra Nostra, 10:49–53, 1999. |
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84 | Xavier Giannakopoulos, Juha Karhunen, and Erkki Oja. An experimental comparison of neural algorithms for independent component analysis and blind separation. Int. J. Neural Syst., 9(2):99–114, 1999. |
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83 | Erkki Oja, Aapo Hyvärinen, and Patrik O. Hoyer. Image feature extraction and denoising by sparse coding. Pattern Anal. Appl., 2(2):104–110, 1999. |
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82 | A. Cichocki, J. Karhunen, W. Kasprzak, and R. Vigário. Neural networks for blind separation with unknown number of sources. Neurocomputing, 24(1-3):55–93, 1999. |
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81 | Krista Lagus, Timo Honkela, Samuel Kaski, and Teuvo Kohonen. WEBSOM for textual data mining. Artificial Intelligence Review, 13:345–364, 1999. |
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80 | Timo Honkela. Pelit, vuorovaikutus ja oppiminen. Kirjastolehti, 7-8, 1999. |
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79 | Tomi Janhunen. On the intertranslatability of non-monotonic logics. Annals of Mathematics and Artificial Intelligence, 27(1-4):79–128, 1999. Special issue with the selected best papers from JELIA 1998. |
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1998 |
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78 | Kimmo Raivio, Jukka Henriksson, and Olli Simula. Neural detection of QAM signal with strongly nonlinear receiver. Neurocomputing, 21:159–171, October 1998. |
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77 | Gerd Brewka and Ilkka Niemelä. Report on the Seventh International Workshop on Nonmonotonic Reasoning. AI Magazine, 19(4):139, 1998. |
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76 | Juha Karhunen, Petteri Pajunen, and Erkki Oja. The nonlinear pca criterion in blind source separation: Relations with other approaches. Neurocomputing, 22(1-3):5–20, 1998. |
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75 | Jorma Laaksonen and Erkki Oja. Learning subspace classifiers and error-corrective feature extraction. IJPRAI, 12(4):423–436, 1998. |
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74 | Erkki Oja. From neural learning to independent components. Neurocomputing, 22(1-3):187–199, 1998. |
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73 | Kimmo Valkealahti and Erkki Oja. Reduced multidimensional co-occurrence histograms in texture classification. IEEE Trans. Pattern Anal. Mach. Intell., 20(1):90–94, 1998. |
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72 | Kimmo Valkealahti and Erkki Oja. Texture classification with single- and multiresolution co-occurrence maps. IJPRAI, 12(4):437–452, 1998. |
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71 | Samuel Kaski, Jari Kangas, and Teuvo Kohonen. Bibliography of self-organizing map (SOM) papers: 1981–1997. Neural Computing Surveys, 1(3&4):1–176, 1998. Available in electronic form at http://www.icsi.berkeley.edu/protect jagota/NCS/: Vol 1, pp. 102–350. |
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70 | Samuel Kaski, Timo Honkela, Krista Lagus, and Teuvo Kohonen. WEBSOM—self-organizing maps of document collections. Neurocomputing, 21:101–117, 1998. |
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69 | S. Kaski, K. Lagus, T. Honkela, and T. Kohonen. Statistical aspects of the WEBSOM system in organizing document collections. Computing Science and Statistics, 29:281–290, 1998. (Scott, D. W., ed.), Interface Foundation of North America, Inc.: Fairfax Station, VA. |
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68 | Samuel Kaski, Timo Honkela, Krista Lagus, and Teuvo Kohonen. WEBSOM—self-organizing maps of document collections. Neurocomputing, 21:101–117, 1998. |
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67 | Samuel Kaski, Krista Lagus, Timo Honkela, and Teuvo Kohonen. Statistical aspects of the WEBSOM system in organizing document collections. Computing Science and Statistics, 29:281–290, 1998. (Scott, D. W., ed.), Interface Foundation of North America, Inc.: Fairfax Station, VA. |
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1997 |
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66 | Mikko Kurimo. Training mixture density HMMs with SOM and LVQ. Computer Speech and Language, 11(4):321–343, October 1997. |
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65 | T. Eiter, G. Gottlob, and Heikki Mannila. Disjunctive datalog. ACM Transactions on Database Systems, 22(3):364–418, September 1997. |
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64 | Samuel Kaski. Data exploration using self-organizing maps. Acta Polytechnica Scandinavica, Mathematics, Computing and Management in Engineering Series No. 82, March 1997. D.Sc.(Tech) Thesis, Helsinki University of Technology, Finland. |
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63 | Samuel Kaski. Data exploration using self-organizing maps. Acta Polytechnica Scandinavica, Mathematics, Computing and Management in Engineering Series No. 82, March 1997. Dr.Tech. Thesis, Helsinki University of Technology, Finland. |
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62 | C. Aravindan, J. Dix, and Ilkka Niemelä. DisLoP: A research project on disjunctive logic programming. AI Communications, 10(3,4):151–165, 1997. |
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61 | C. Aravindan, J. Dix, and Ilkka Niemelä. DisLoP: A research project on disjunctive logic programming. Computational Logic, 3(2), 1997. |
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60 | Samuel Kaski. Computationally efficient approximation of a probabilistic model for document representation in the WEBSOM full-text analysis method. Neural Processing Letters, 5:139–151, 1997. |
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59 | T. Eiter and Heikki Mannila. Distance measures for point sets and their computation. Acta Informatica, 34(2):109–133, 1997. |
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58 | Heikki Mannila and H. Toivonen. Levelwise search and borders of theories in knowledge discovery. Data Mining and Knowledge Discovery, 1(3):241–258, 1997. |
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57 | Heikki Mannila, H. Toivonen, and I. Verkamo. Discovery of frequent episodes in event sequences. Data Mining and Knowledge Discovery, 1(3):259–289, 1997. |
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56 | H. Ahonen, H. Mannila, and E. Nikunen. Generating grammars for sgml tagged texts lacking dtd. Mathematical and Computer Modelling, 26(1):1–13, 1997. |
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55 | Aapo Hyvärinen and Erkki Oja. A fast fixed-point algorithm for independent component analysis. Neural Computation, 9(7):1483–1492, 1997. |
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54 | Erkki Oja. The nonlinear pca learning rule in independent component analysis. Neurocomputing, 17(1):25–45, 1997. |
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53 | R. Vigário. Extraction of ocular artifacts from eeg using independent component analysis. Electroenceph. clin. Neurophysiol., 103:395–404, 1997. |
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52 | J. Karhunen, E. Oja, L. Wang, R. Vigário, and J. Joutsensalo. A class of neural networks for independent component analysis. IEEE Trans. Neural Networks, 8(3):486–504, 1997. |
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51 | J. Sinkkonen and S. Kaski. Topographic components model with adaptive latencies. Neuroimage, 5(4):S445, 1997. A. W. Toga and R. S. J. Frackowiak and J. C. Mazziotta (eds.), Proceedings of the Third International Conference on Functional Mapping of the Human Brain, May 19-23 1997, Copenhagen, Denmark. |
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50 | Teuvo Kohonen, Samuel Kaski, and Harri Lappalainen. Self-organized formation of various invariant-feature filters in the adaptive-subspace SOM. Neural Computation, 9:1321–1344, 1997. |
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49 | Samuel Kaski. Computationally efficient approximation of a probabilistic model for document representation in the WEBSOM full-text analysis method. Neural Processing Letters, 5:139–151, 1997. |
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1996 |
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48 | T. Imielinski and Heikki Mannila. A database perspective on knowledge discovery. Communications of the ACM, 39(11):58–64, November 1996. |
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47 | Timo Honkela, Samuel Kaski, Krista Lagus, and Teuvo Kohonen. Self-organizing maps of document collections. ALMA, 1(2), 1996. Electronic Journal, address http://www.diemme.it/ luigi/alma.html. |
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46 | Aapo Hyvärinen and Erkki Oja. Simple neuron models for independent component analysis. Int. J. Neural Syst., 7(6):671–688, 1996. |
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45 | Heikki Kälviäinen, Petri Hirvonen, and Erkki Oja. Houghtool – a software package for the use of the hough transform. Pattern Recognition Letters, 17(8):889–897, 1996. |
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44 | Erkki Oja and Kimmo Valkealahti. Co-occurrence map: Quantizing multidimensional texture histograms. Pattern Recognition Letters, 17(7):723–730, 1996. |
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43 | Erkki Oja and Liuyue Wang. Robust fitting by nonlinear neural units. Neural Networks, 9(3):435–444, 1996. |
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42 | Erkki Oja and Liuyue Wang. Neural fitting: Robustness by anti-hebbian learning. Neurocomputing, 12(2-3):155–170, 1996. |
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41 | Janne Sinkkonen, Samuel Kaski, Minna Huotilainen, Risto J. Ilmoniemi, Risto Näätänen, and Kai Kaila. Optimal resource allocation for novelty detection in a human auditory memory. Neuroreport, 7:2479–2482, 1996. |
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40 | Timo Honkela, Samuel Kaski, Krista Lagus, and Teuvo Kohonen. Self-organizing maps of document collections. ALMA, 1(2), 1996. Electronic Journal, address http://www.diemme.it/ luigi/alma.html. |
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1995 |
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39 | Ilkka Niemelä. A decision method for nonmonotonic reasoning based on autoepistemic reasoning. Journal of Automated Reasoning, 14:3–42, 1995. |
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38 | P. Kilpeläinen and Heikki Mannila. Ordered and unordered tree inclusion. SIAM Journal on Computing, 24(2):340–356, 1995. |
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37 | T. Eiter, P. Kilpeläinen, and Heikki Mannila. Recognizing renamable generalized propositional horn formulas is np-complete. Discrete Applied Mathematics, 59:23–31, 1995. |
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36 | J. Kivinen and Heikki Mannila. Approximate inference of functional dependencies from relations. Theoretical Computer Science, 149(1):129–149, 1995. |
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35 | Heikki Kälviäinen, Petri Hirvonen, Lei Xu, and Erkki Oja. Probabilistic and non-probabilistic hough transforms: overview and comparisons. Image Vision Comput., 13(4):239–252, 1995. |
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34 | Sirkka-Liisa Joutsiniemi, Samuel Kaski, and Andreo Larsen. Self-organizing map in recognition of topographic patterns of EEG spectra. IEEE Transactions on Biomedical Engineering, 42:1062–1068, 1995. |
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33 | Timo Honkela. Subjektiivisuuden konnektionistiset mallit. Psykologia, 30(1):45–48, 1995. |
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1994 |
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32 | Heikki Mannila and K.-J. Räihä. Algorithms for inferring functional dependencies from relations. Data & Knowledge Engineering, 12(1):83–99, February 1994. |
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31 | Ilkka Niemelä. Autoepisteeminen logiikka epämonotonisen päättelyn pohjana. Tietojenkäsittelytiede, 6:15–25, 1994. |
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30 | Ilkka Niemelä and Jussi Rintanen. On the impact of stratification on the complexity of nonmonotonic reasoning. Journal of Applied Non-Classical Logics, 4(2):141–179, 1994. |
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29 | Samuel Kaski and Teuvo Kohonen. Winner-take-all networks for physiological models of competitive learning. Neural Networks, 7:973–984, 1994. |
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1993 |
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28 | V. Estivill-Castro, Heikki Mannila, and D. Wood. Right invariant metrics and measures of presortedness. Discrete Applied Mathematics, 42:1–16, 1993. |
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1992 |
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27 | M. Kantola, Heikki Mannila, K.-J. Räihä, and H. Siirtola. Discovering functional and inclusion dependencies in relational databases. International Journal of Intelligent Systems, 7(7):591–607, September 1992. |
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26 | Ilkka Niemelä. On the decidability and complexity of autoepistemic reasoning. Fundamenta Informaticae, 17(1,2):117–155, 1992. |
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25 | Heikki Mannila and K.-J. Räihä. On the complexity of dependency inference. Discrete Applied Mathematics, 40:237–243, 1992. |
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24 | Jouko Lampinen and Erkki Oja. Clustering properties of hierarchical self-organizing maps. Journal of Mathematical Imaging and Vision, 2(2-3):261–272, 1992. |
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23 | Erkki Oja. Principal components, minor components, and linear neural networks. Neural Networks, 5(6):927–935, 1992. |
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22 | Lei Xu, Erkki Oja, and Ching Y. Suen. Modified hebbian learning for curve and surface fitting. Neural Networks, 5(3):441–457, 1992. |
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1991 |
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21 | Kimmo Raivio, Olli Simula, and Jukka Henriksson. Improving decision feedback equaliser performance using neural networks. Electronic Letters, 27(23):2151–2153, November 1991. |
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20 | Lei Xu, Adam Krzyzak, and Erkki Oja. Neural nets for dual subspace pattern recognition method. Int. J. Neural Syst., 2(3):169–184, 1991. |
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1990 |
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19 | P. Kilpeläinen and Heikki Mannila. Generation of test cases for simple prolog programs. Acta Cybernetica, 9(3):235–246, 1990. |
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18 | Heikki Mannila and E. Ukkonen. Unifications, deunifications, and their complexity. BIT, 30(4):599–619, 1990. |
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17 | Jussi Parkkinen, K. Selkäinaho, and Erkki Oja. Detecting texture periodicity from the cooccurrence matrix. Pattern Recognition Letters, 11(1):43–50, 1990. |
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16 | Lei Xu, Erkki Oja, and Pekka Kultanen. A new curve detection method: Randomized hough transform (rht). Pattern Recognition Letters, 11(5):331–338, 1990. |
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1989 |
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15 | Heikki Mannila and K.-J. Räihä. Automatic generation of test data for relational queries. Journal of Computer and System Sciences, 38(2):240–258, 1989. |
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14 | Erkki Oja. Neural networks, principal components, and subspaces. Int. J. Neural Syst., 1(1):61–68, 1989. |
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1988 |
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13 | Heikki Mannila and D. Wood. A note on the largest empty rectangle problem. BIT, 28:79–183, 1988. |
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12 | Harri Jäppinen, Timo Honkela, Heikki Hyötyniemi, and Aarno Lehtola. A multilevel natural language processing model. Nordic Journal of Linguistics, 11:69–82, 1988. |
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1986 |
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11 | Heikki Mannila and K.-J. Räihä. Design by example: an application of Armstrong relations. Journal of Computer and System Sciences, 33(2):126–141, 1986. |
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1985 |
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10 | Heikki Mannila. Measures of presortedness and optimal sorting algorithms. IEEE Transactions on Computers, C-34:318–325, April 1985. |
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9 | Heikki Mannila and D. Wood. A simple proof of the rectilinear art gallery theorem. International Journal of Computer Mathematics, 17:141–149, 1985. |
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8 | Heikki Mannila and K. Mehlhorn. A fast algorithm for renaming a set of clauses as a horn set. Information Processing Letters, 21:269–272, 1985. |
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7 | R.J.R. Back and Heikki Mannila. On the suitability of trace semantics for modular proofs of communicating processes (full version). Theoretical Computer Science, 39:47–68, 1985. |
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1984 |
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6 | Heikk Mannila and Esko Ukkonen. A simple linear-time algorithm for in situ merging. Information Processing Letters, 18(4):203–208, May 1984. |
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5 | R.J.R. Back and Heikki Mannila. A semantic approach to program modularity. Information and Control, 60(1-3):138–167, March 1984. |
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1983 |
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4 | Heikki Mannila. A topological characterization of  -compactness. Annals of Pure and Applied Logic, 25:301–305, 1983. |
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3 | Heikki Mannila and Kari-Jouko Räihä. On the relationship of minimum and optimum covers for a set of functional dependencies. Acta Informatica, 20:143–158, 1983. |
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2 | Erkki Oja and Maija Kuusela. The alsm algorithm - an improved subspace method of classification. Pattern Recognition, 16(4):421–427, 1983. |
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1979 |
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1 | Erkki Oja. On the construction of projectors using products of elementary matrices. IEEE Trans. Computers, 28(1):65–66, 1979. |
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