to appear |
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18 | Tarja Niini, Leo Lahti, Francesca Michelacci, Shinsuke Ninomiya, Claudia Maria Hattinger, Mohamed Guled, Tom Böhling, Piero Picci, Massimo Serra, and Sakari Knuutila. Array comparative genomic hybridization reveals frequent alterations of g1/s checkpoint genes in undifferentiated pleomorphic sarcoma of bone. Genes, Chromosomes and Cancer, to appear. |
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17 | Ioana Borze, Mohamed Guled, Suad Musse, Anna Raunio, Erkki Elonen, Ulla Saarinen-Pihkala, Marja-Liisa Karjalainen-Lindsberg, Leo Lahti, and Sakari Knuutila. MicroRNA microarrays on archive bone marrow core biopsies of leukemias - method validation. Leukemia Research, to appear. |
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2011 |
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16 | Leo Lahti, Laura L. Elo, Tero Aittokallio, and Samuel Kaski. Probabilistic analysis of probe reliability in differential gene expression studies with short oligonucleotide arrays. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 8(1):217–225, 2011. |
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2010 |
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15 | Leo Lahti. Probabilistic Analysis of the Human Transcriptome with Side Information. Diss, AALTO-ICS, ESPOO, December 2010. |
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14 | Leo Lahti, Antonio Gusmao, and Olli-Pekka Huovilainen. Netresponse (functional network analysis). BioConductor, October 2010. Computer program. |
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13 | Leo Lahti, Abhishek Tripathi, and Olli-Pekka Huovilainen. Dependency modeling toolkit. ICML workshop, June 2010. Computer program. |
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12 | Olli-Pekka Huovilainen and Leo Lahti. pint: Pairwise integration of functional genomics data. BioConductor, April 2010. Computer program. |
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11 | Leo Lahti. opencomp blog. Wordpress blog, 2010. Blog. |
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10 | Leo Lahti, Juha E. A. Knuuttila, and Samuel Kaski. Global modeling of transcriptional responses in interaction networks. Bioinformatics, 26:2713–2720, 2010. Implementations in R and Matlab available at http://netpro.r-forge.r-project.org/. |
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9 | Neda Mosakhani, Mohamed Guled, Leo Lahti, Ioana Borze, Minna Forsman, Jorma Ryhänen, and Sakari Knuutila. Unique microRNA profile in Dupuytren's contracture supports deregulation of beta-catenin pathway. Modern Pathology, 23:1544–1522, 2010. |
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2009 |
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8 | Leo Lahti. RPA: probe reliability and differential gene expression analysis. BioConductor, October 2009. Computer program. |
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7 | Mohamed Guled, Leo Lahti, Pamela M. Lindholm, Kaisa Salmenkivi, Izhar Bagwan, Andrew G. Nicholson, and Sakari Knuutila. CDKN2A, NF2 and JUN Are Dysregulated Among Other Genes by miRNAs in Malignant Mesothelioma - a miRNA Microarray Analysis. Genes, Chromosomes and Cancer, 48(7):615–623, 2009. |
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6 | Leo Lahti, Samuel Myllykangas, Sakari Knuutila, and Samuel Kaski. Dependency detection with similarity constraints. In Proc. MLSP'09 IEEE International Workshop on Machine Learning for Signal Processing, 2009. Open source implementation: http://bioconductor.org/packages/release/bioc/html/pint.html. |
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2007 |
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5 | Penny Nymark, Pamela M. Lindholm, Mikko V. Korpela, Leo Lahti, Salla Ruosaari, Samuel Kaski, Jaakko Hollmen, Sisko Anttila, Vuokko L. Kinnula, and Sakari Knuutila. Gene expression profiles in asbestos-exposed epithelial and mesothelial lung cell lines. BMC Genomics, 8(62), 2007. |
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2005 |
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4 | Janne Sinkkonen, Samuel Kaski, Janne Nikkilä, and Leo Lahti. Associative Clustering (AC): Technical Details. Technical Report A84, Helsinki University of Technology, Espoo, Finland, April 2005. Publications in Computer and Information Science. |
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3 | Samuel Kaski, Janne Nikkilä, Janne Sinkkonen, Leo Lahti, Juha Knuuttila, and Christophe Roos. Associative clustering for exploring dependencies between functional genomics data sets. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2(3):203–216, 2005. Special Issue on Machine Learning for Bioinformatics – Part 2. |
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2004 |
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2 | Janne Sinkkonen, Janne Nikkilä, Leo Lahti, and Samuel Kaski. Associative clustering. In Boulicaut, Esposito, Giannotti, and Pedreschi, editors, Machine Learning: ECML2004 (Proceedings of the ECML'04, 15th European Conference on Machine Learning), pages 396–406. Springer, Berlin, 2004. |
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2003 |
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1 | Janne Sinkkonen, Janne Nikkilä, Leo Lahti, and Samuel Kaski. Associative clustering by maximizing a Bayes factor. Technical Report A68, Helsinki University of Technology, Laboratory of Computer and Information Science, Espoo, Finland, 2003. |
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