Publications by José Caldas

2012

6José Caldas, Nils Gehlenborg, Eeva Kettunen, Ali Faisal, Mikko Rönty, Andrew G. Nicholson, Sakari Knuutila, Alvis Brazma, and Samuel Kaski. Data-driven information retrieval in heterogeneous collections of transcriptomics data links SIM2s to malignant pleural mesothelioma. Bioinformatics, 28:246–253, 2012.
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2011

5José Caldas and Samuel Kaski. Hierarchical generative biclustering for microRNA expression analysis. Journal of Computational Biology, 18:251–261, 2011.
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See www.liebertonline.com ...

2010

4José Caldas and Samuel Kaski. Hierarchical generative biclustering for microRNA expression analysis. In Bonnie Berger, editor, Research in Computational Molecular Biology, Proceedings of 14th Annual International Conference RECOMB 2010, Lisbon, Portugal, April 25-28, pages 65–79, Berlin, 2010. Springer.
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2009

3José Caldas, Nils Gehlenborg, Ali Faisal, Alvis Brazma, and Samuel Kaski. Probabilistic retrieval and visualization of biologically relevant microarray experiments. Bioinformatics, 25:i145–i153, 2009. (ISMB/ECCB 2009).
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See bioinformatics.oxfordjournals.org ...
2José Caldas, Nils Gehlenborg, Ali Faisal, Alvis Brazma, and Samuel Kaski. Probabilistic retrieval and visualization of biologically relevant microarray experiments. BMC Bioinformatics, 10:P1, 2009. Poster abstract for the 5th ISCB Student Council. Best poster award.
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See www.biomedcentral.com ...

2008

1José Caldas and Samuel Kaski. Bayesian biclustering with the plaid model. In José Príncipe, Deniz Erdogmus, and Tulay Adali, editors, Proceedings of the IEEE International Workshop on Machine Learning for Signal Processing XVIII, pages 291–296. IEEE, 2008.
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See www.cis.hut.fi ...