to appear |
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37 | Elena Czeizler, Eugen Czeizler, Bogdan Iancu, and Ion Petre. Quantitative refinement of reaction models. International Journal of Unconventional Computing, to appear. In Press. |
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2012 |
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36 | Elena Czeizler, Eugen Czeizler, Bogdan Iancu, and Ion Petre. Quantitative model refinement as a solution to the combinatorial size explosion of biomodels. Electronic Notes in Theoretical Computer Science, 284(0):35–53, 2012. |
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35 | Eugen Czeizler, Andrzej Mizera, Elena Czeizler, Ralph-Johan Back, John E. Eriksson, and Ion Petre. Quantitative analysis of the self-assembly strategies of intermediate filaments from tetrameric vimentin. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 9(3):885–898, 2012. |
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34 | Eugen Czeizler, Vladimir Rogojin, and Ion Petre. The phosphorylation of the heat shock factor as a modulator for the heat shock response. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 9(5):885–898, 2012. |
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33 | Eugen Czeizler and Alexandru Popa. Synthesizing minimal tile sets for complex patterns in the framework of patterned dna self-assembly. In Darko Stefanovic and Andrew J. Turberfield, editors, DNA Computing and Molecular Programming - 18th International Conference, DNA 18. Proceedings, volume 7433 of Lecture Notes in Computer Science, pages 58–72. Springer, 2012. |
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32 | Abdulmelik Mohammed, Daniel Pletea, and Eugen Czeizler. Computational modelling of the kinetic tile assembly model using a rule-based approach. In DNA Computing and Molecular Programming - 18th International Conference, DNA 18. Abstracts of Talks and Posters, page 36, 2012. Poster. |
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31 | Andrzej Mizera, Eugen Czeizler, and Ion Petre. Self-assembly models of variable resolution. LNBI Transactions on Computational Systems Biology, XIV(7625):181–203, 2012. |
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2011 |
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30 | Eugen Czeizler, Vladimir Rogojin, and Ion Petre. The phosphorylation of the heat shock factor as a modulator for the heat shock response. In Francois Fages, editor, CMSB'11 9th International Conference on Computational Methods in Systems Biology Paris, France — September 21 - 23, 2011, pages 9–23, New York, 2011. ACM. |
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29 | Eugen Czeizler, Tuomo Lempiäinen, and Pekka Orponen. A design framework for carbon nanotube circuits affixed on DNA origami tiles. In Proceedings of the 8th Annual Conference on Foundations of Nanoscience: Self-Assembled Architectures and Devices (FNANO11, Snowbird UT, April 2011), pages 186–187, 2011. Poster. |
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28 | Eugen Czeizler, Tuomo Lempiäinen, and Pekka Orponen. Nano architectures for carbon nanotube circuits: design, analysis, and experimental attempts. In Proceedings of the Workshop on Language Theory in Biocomputing, 2011. Extended Abstract. |
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27 | Tuomo Lempiäinen, Eugen Czeizler, and Pekka Orponen. Synthesizing small and reliable tile sets for patterned DNA self-assembly. In L. Cardelli and W. Shih, editors, Proceedings of the 17th Conference on DNA Computing and Molecular Programming (DNA17, Pasadena CA, September 2011), volume 6937 of Lecture Notes in Computer Science, pages 145–159, Berlin Heidelberg, 2011. Springer-Verlag. |
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26 | Elena Czeizler, Eugen Czeizler, Lila Kari, and Shinnosuke Seki. An extension of the lyndon-schützenberger result to pseudoperiodic words. Information and computation, 209(4):717–730, 2011. |
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25 | Eugen Czeizler and Lila Kari. Towards a neighborhood simplification of tile systems: From moore to quasi-linear dependencies. Natural Computing, 10(1):103–117, 2011. |
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2009 |
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24 | Elena Czeizler, Eugen Czeizler, Lila Kari, and Shinnosuke Seki. An extension of lyndon-schutzenberger's result to pseudoperiodic words. Technical Report TR-722, University of Western Ontario, London, Canada, 2009. |
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23 | Andrzej Mizera, Elena Czeizler, Eugen Czeizler, Ion Petre, John E. Eriksson, and Ralph-Johan Back. Quantitative kinetic strategies for the in vitro assembly of intermediate filaments from tetrameric vimentin. Technical Report TUCS 963, Åbo Akademi, Dept. of Inf. Tech., Turku, Finland, 2009. |
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22 | Elena Czeizler, Eugen Czeizler, Ralph-Johan Back, and Ion Petre. Control strategies for the regulation of the eukaryotic heat shock response. In Pierpaolo Degano and Roberto Gorrieri, editors, Proceeding of the 7th International Conference Computational Methods in Systems Biology, CMSB 2009, volume 5688 of Lecture Notes in Computer Science, pages 111–125. Springer, 2009. |
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21 | Elena Czeizler, Eugen Czeizler, Lila Kari, and Shinnosuke Seki. An extension of the lyndon schützenberger result to pseudoperiodic words. In Volker Diekert and Dirk Nowotka, editors, Proceedings of the 13th International Conference on Developments in Language Theory, volume 5583 of Lecture Notes in Computer Science, pages 183–194. Springer, 2009. |
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20 | Elena Czeizler, Eugen Czeizler, Lila Kari, and Kai Salomaa. On the descriptional complexity of watson-crick automata. Theor. Comput. Sci., 410(35):3250–3260, 2009. |
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19 | Eugen Czeizler and Lila Kari. Geometrical tile design for complex neighborhoods. Frontiers in Computational Neuroscience, 3(0), 2009. |
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2008 |
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18 | Marie-Pierre Béal, Eugen Czeizler, Jarkko Kari, and Dominique Perrin. Unambiguous automata. Mathematics in Computer Science, 1(4):625–638, 2008. |
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17 | Elena Czeizler, Eugen Czeizler, Lila Kari, and Kai Salomaa. Watson-crick automata: determinism and state complexity. In C. Câmpeanu and G. Pighizzini, editors, Proceedings of the 10th Workshop Descriptional Complexity of Formal Systems, DCFS 2008, pages 121–133, 2008. |
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2007 |
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16 | Eugen Czeizler. The Inverse Neighborhood Problem and Applications of Welch Sets in Automata Theory. PhD thesis, University of Turku, Department of Mathematics, Turku Center for Computer Science, Dissertations No. 85, Turku, Finland, 2007. Honours: The thesis was approved ``with honours´´. |
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15 | Eugen Czeizler and Jarkko Kari. A tight linear bound on the synchronization delay of bijective automata. Theor. Comput. Sci., 380(1-2):23–36, 2007. |
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14 | Marie-Pierre Béal, Eugen Czeizler, Jarkko Kari, and Dominique Perrin. On the synchronization delay of complete local automata. In Proceedings of London Algorithmic Workshop, LAW 2007, 2007. |
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2006 |
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13 | Eugen Czeizler and Jarkko Kari. A tight linear bound on the synchronization delay of bijective automata. Technical Report TUCS 760, University of Turku, Dept. of Mathematics, TUCS, Turku, Finland, 2006. |
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12 | Elena Czeizler and Eugen Czeizler. Parallel communicating watson-crick automata systems. Acta Cybern., 17(4):685–700, 2006. |
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11 | Elena Czeizler and Eugen Czeizler. A short survey on watson-crick automata. Bulletin of the EATCS, 88:104–119, 2006. |
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10 | Eugen Czeizler and Jarkko Kari. On testing the equality of sofic systems. In Internal Proceedings of XIth MONS DAYS of Theoretical Computer Science, 2006. |
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9 | Eugen Czeizler. Bijective automata: linear synchronization delay and decision algorithms. In Pre-proceedings of EMS International School and Conference on Combinatorics, Automata and Number Theory, CANT 2006, 2006. |
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8 | Elena Czeizler and Eugen Czeizler. On the power of parallel communicating watson-crick automata systems. Theor. Comput. Sci., 358(1):142–147, 2006. |
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2005 |
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7 | Elena Czeizler and Eugen Czeizler. On the power of parallel communicating watson-crick automata systems. Technical Report TUCS 722, University of Turku, Dept. of Mathematics, TUCS, Turku, Finland, 2005. |
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6 | Eugen Czeizler and Jarkko Kari. A tight linear bound on the neighborhood of inverse cellular automata. In Luís Caires, Giuseppe F. Italiano, Luís Monteiro, Catuscia Palamidessi, and Moti Yung, editors, Proceeedings of the 32nd International Colloquium on ICALP Automata, Languages and Programming, ICALP 2005, volume 3580 of Lecture Notes in Computer Science, pages 410–420. Springer, 2005. |
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5 | Elena Czeizler and Eugen Czeizler. Parallel communicating watson-crick automata systems. In Proceedings of 11th International Conference on Automata and Formal Languages, AFL 2005, pages 83–96, 2005. |
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2004 |
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4 | Eugen Czeizler. On the size of the inverse neighborhoods for one-dimensional reversible cellular automata. In Proceedings of Workshop on Discrete Models for Complex Systems, DMCS 2004, 2004. |
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3 | Eugen Czeizler. On the size of the inverse neighborhoods for one-dimensional reversible cellular automata. Theor. Comput. Sci., 325(2):273–284, 2004. |
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2003 |
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2 | Eugen Czeizler. Self-activating p systems. In Proceedings of the International Worckshop on Membrane Computing, WMC-CdeA 2002, volume 2597 of Lecture Notes in Computer Science, pages 234–246. Springer, 2003. |
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2002 |
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1 | Eugen Czeizler. Self-activating p systems. Technical Report TUCS 482, University of Turku, Dept. of Mathematics, TUCS, Turku, Finland, 2002. |
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